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Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v.3.0.
Heirendt L, Arreckx S, Pfau T, Mendoza SN, Richelle A, Heinken A, Haraldsdóttir HS, Wachowiak J, Keating SM, Vlasov V, Magnusdóttir S, Ng CY, Preciat G, Žagare A, Chan SHJ, Aurich MK, Clancy CM, Modamio J, Sauls JT, Noronha A, Bordbar A, Cousins B, El Assal DC, Valcarcel LV, Apaolaza I, Ghaderi S, Ahookhosh M, Ben Guebila M, Kostromins A, Sompairac N, Le HM, Ma D, Sun Y, Wang L, Yurkovich JT, Oliveira MAP, Vuong PT, El Assal LP, Kuperstein I, Zinovyev A, Hinton HS, Bryant WA, Aragón Artacho FJ, Planes FJ, Stalidzans E, Maass A, Vempala S, Hucka M, Saunders MA, Maranas CD, Lewis NE, Sauter T, Palsson BØ, Thiele I, Fleming RMT. Heirendt L, et al. Among authors: sauter t. Nat Protoc. 2019 Mar;14(3):639-702. doi: 10.1038/s41596-018-0098-2. Nat Protoc. 2019. PMID: 30787451 Free PMC article.
Constraint Based Modeling Going Multicellular.
Martins Conde Pdo R, Sauter T, Pfau T. Martins Conde Pdo R, et al. Among authors: sauter t. Front Mol Biosci. 2016 Feb 10;3:3. doi: 10.3389/fmolb.2016.00003. eCollection 2016. Front Mol Biosci. 2016. PMID: 26904548 Free PMC article. Review.
FALCON: a toolbox for the fast contextualization of logical networks.
De Landtsheer S, Trairatphisan P, Lucarelli P, Sauter T. De Landtsheer S, et al. Among authors: sauter t. Bioinformatics. 2017 Nov 1;33(21):3431-3436. doi: 10.1093/bioinformatics/btx380. Bioinformatics. 2017. PMID: 28673016 Free PMC article.
Integrated In Vitro and In Silico Modeling Delineates the Molecular Effects of a Synbiotic Regimen on Colorectal-Cancer-Derived Cells.
Greenhalgh K, Ramiro-Garcia J, Heinken A, Ullmann P, Bintener T, Pacheco MP, Baginska J, Shah P, Frachet A, Halder R, Fritz JV, Sauter T, Thiele I, Haan S, Letellier E, Wilmes P. Greenhalgh K, et al. Among authors: sauter t. Cell Rep. 2019 Apr 30;27(5):1621-1632.e9. doi: 10.1016/j.celrep.2019.04.001. Cell Rep. 2019. PMID: 31042485 Free article.
A dynamic multi-tissue model to study human metabolism.
Martins Conde P, Pfau T, Pires Pacheco M, Sauter T. Martins Conde P, et al. Among authors: sauter t. NPJ Syst Biol Appl. 2021 Jan 22;7(1):5. doi: 10.1038/s41540-020-00159-1. NPJ Syst Biol Appl. 2021. PMID: 33483512 Free PMC article.
242 results