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Multiplexed (18-Plex) Measurement of Signaling Targets and Cytotoxic T Cells in Trastuzumab-Treated Patients using Imaging Mass Cytometry.
Carvajal-Hausdorf DE, Patsenker J, Stanton KP, Villarroel-Espindola F, Esch A, Montgomery RR, Psyrri A, Kalogeras KT, Kotoula V, Foutzilas G, Schalper KA, Kluger Y, Rimm DL. Carvajal-Hausdorf DE, et al. Among authors: stanton kp. Clin Cancer Res. 2019 May 15;25(10):3054-3062. doi: 10.1158/1078-0432.CCR-18-2599. Epub 2019 Feb 22. Clin Cancer Res. 2019. PMID: 30796036 Free PMC article. Clinical Trial.
Gating mass cytometry data by deep learning.
Li H, Shaham U, Stanton KP, Yao Y, Montgomery RR, Kluger Y. Li H, et al. Among authors: stanton kp. Bioinformatics. 2017 Nov 1;33(21):3423-3430. doi: 10.1093/bioinformatics/btx448. Bioinformatics. 2017. PMID: 29036374 Free PMC article.
Removal of batch effects using distribution-matching residual networks.
Shaham U, Stanton KP, Zhao J, Li H, Raddassi K, Montgomery R, Kluger Y. Shaham U, et al. Among authors: stanton kp. Bioinformatics. 2017 Aug 15;33(16):2539-2546. doi: 10.1093/bioinformatics/btx196. Bioinformatics. 2017. PMID: 28419223 Free PMC article.