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Conserved host-pathogen PPIs. Globally conserved inter-species bacterial PPIs based conserved host-pathogen interactome derived novel target in C. pseudotuberculosis, C. diphtheriae, M. tuberculosis, C. ulcerans, Y. pestis, and E. coli targeted by Piper betel compounds.
Barh D, Gupta K, Jain N, Khatri G, León-Sicairos N, Canizalez-Roman A, Tiwari S, Verma A, Rahangdale S, Shah Hassan S, dos Santos AR, Ali A, Guimarães LC, Thiago Jucá Ramos R, Devarapalli P, Barve N, Bakhtiar M, Kumavath R, Ghosh P, Miyoshi A, Silva A, Kumar A, Misra AN, Blum K, Baumbach J, Azevedo V. Barh D, et al. Among authors: baumbach j. Integr Biol (Camb). 2013 Mar;5(3):495-509. doi: 10.1039/c2ib20206a. Integr Biol (Camb). 2013. PMID: 23288366
A framework for modeling epistatic interaction.
Blumenthal DB, Baumbach J, Hoffmann M, Kacprowski T, List M. Blumenthal DB, et al. Among authors: baumbach j. Bioinformatics. 2021 Jul 19;37(12):1708-1716. doi: 10.1093/bioinformatics/btaa990. Bioinformatics. 2021. PMID: 33252645
On the limits of active module identification.
Lazareva O, Baumbach J, List M, Blumenthal DB. Lazareva O, et al. Among authors: baumbach j. Brief Bioinform. 2021 Sep 2;22(5):bbab066. doi: 10.1093/bib/bbab066. Brief Bioinform. 2021. PMID: 33782690
Genomic profiling in ovarian cancer retreated with platinum based chemotherapy presented homologous recombination deficiency and copy number imbalances of CCNE1 and RB1 genes.
da Costa AABA, do Canto LM, Larsen SJ, Ribeiro ARG, Stecca CE, Petersen AH, Aagaard MM, de Brot L, Baumbach J, Baiocchi G, Achatz MI, Rogatto SR. da Costa AABA, et al. Among authors: baumbach j. BMC Cancer. 2019 May 6;19(1):422. doi: 10.1186/s12885-019-5622-4. BMC Cancer. 2019. PMID: 31060523 Free PMC article.
EpiGEN: an epistasis simulation pipeline.
Blumenthal DB, Viola L, List M, Baumbach J, Tieri P, Kacprowski T. Blumenthal DB, et al. Among authors: baumbach j. Bioinformatics. 2020 Dec 8;36(19):4957-4959. doi: 10.1093/bioinformatics/btaa245. Bioinformatics. 2020. PMID: 32289146
401 results