Touzet H - Search Results

1

A complete protocol for whole-genome sequencing of virus from clinical samples: Application to coronavirus OC43.

Maurier F, Beury D, Fléchon L, Varré JS, Touzet H, Goffard A, Hot D, Caboche S. Maurier F, et al. Among authors: touzet h. Virology. 2019 May;531:141-148. doi: 10.1016/j.virol.2019.03.006. Epub 2019 Mar 9. Virology. 2019. PMID: 30878524 Free PMC article.

2

Efficient and accurate P-value computation for Position Weight Matrices.

Touzet H, Varré JS. Touzet H, et al. Algorithms Mol Biol. 2007 Dec 11;2:15. doi: 10.1186/1748-7188-2-15. Algorithms Mol Biol. 2007. PMID: 18072973 Free PMC article.

3

TFM-Explorer: mining cis-regulatory regions in genomes.

Tonon L, Touzet H, Varré JS. Tonon L, et al. Among authors: touzet h. Nucleic Acids Res. 2010 Jul;38(Web Server issue):W286-92. doi: 10.1093/nar/gkq473. Epub 2010 Jun 3. Nucleic Acids Res. 2010. PMID: 20522509 Free PMC article.

4

Assessment of Common and Emerging Bioinformatics Pipelines for Targeted Metagenomics.

Siegwald L, Touzet H, Lemoine Y, Hot D, Audebert C, Caboche S. Siegwald L, et al. Among authors: touzet h. PLoS One. 2017 Jan 4;12(1):e0169563. doi: 10.1371/journal.pone.0169563. eCollection 2017. PLoS One. 2017. PMID: 28052134 Free PMC article.

5

Comparative assessment of long-read error correction software applied to Nanopore RNA-sequencing data.

Lima L, Marchet C, Caboche S, Da Silva C, Istace B, Aury JM, Touzet H, Chikhi R. Lima L, et al. Among authors: touzet h. Brief Bioinform. 2020 Jul 15;21(4):1164-1181. doi: 10.1093/bib/bbz058. Brief Bioinform. 2020. PMID: 31232449 Free article. Review.

6

Use of whole-genome sequencing in the molecular investigation of care-associated HCoV-OC43 infections in a hematopoietic stem cell transplant unit.

Beury D, Fléchon L, Maurier F, Caboche S, Varré JS, Touzet H, Faure K, Dubuisson J, Hot D, Guery B, Goffard A. Beury D, et al. Among authors: touzet h. J Clin Virol. 2020 Jan;122:104206. doi: 10.1016/j.jcv.2019.104206. Epub 2019 Nov 16. J Clin Virol. 2020. PMID: 31783264 Free PMC article.

7

Genetic basis for virulence differences of various Cryptosporidium parvum carcinogenic isolates.

Audebert C, Bonardi F, Caboche S, Guyot K, Touzet H, Merlin S, Gantois N, Creusy C, Meloni D, Mouray A, Viscogliosi E, Certad G, Benamrouz-Vanneste S, Chabé M. Audebert C, et al. Among authors: touzet h. Sci Rep. 2020 Apr 30;10(1):7316. doi: 10.1038/s41598-020-64370-0. Sci Rep. 2020. PMID: 32355272 Free PMC article.

8

MATAM: reconstruction of phylogenetic marker genes from short sequencing reads in metagenomes.

Pericard P, Dufresne Y, Couderc L, Blanquart S, Touzet H. Pericard P, et al. Among authors: touzet h. Bioinformatics. 2018 Feb 15;34(4):585-591. doi: 10.1093/bioinformatics/btx644. Bioinformatics. 2018. PMID: 29040406

9

DiNAMO: highly sensitive DNA motif discovery in high-throughput sequencing data.

Saad C, Noé L, Richard H, Leclerc J, Buisine MP, Touzet H, Figeac M. Saad C, et al. Among authors: touzet h. BMC Bioinformatics. 2018 Jun 11;19(1):223. doi: 10.1186/s12859-018-2215-1. BMC Bioinformatics. 2018. PMID: 29890948 Free PMC article.

10

Detecting MicroRNAs in Plant Genomes with miRkwood.

Legrand S, Guigon I, Touzet H. Legrand S, et al. Among authors: touzet h. Methods Mol Biol. 2022;2512:103-120. doi: 10.1007/978-1-0716-2429-6_8. Methods Mol Biol. 2022. PMID: 35818003

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