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Structural profiles of human miRNA families from pairwise clustering.
Kaczkowski B, Torarinsson E, Reiche K, Havgaard JH, Stadler PF, Gorodkin J. Kaczkowski B, et al. Among authors: stadler pf. Bioinformatics. 2009 Feb 1;25(3):291-4. doi: 10.1093/bioinformatics/btn628. Epub 2008 Dec 4. Bioinformatics. 2009. PMID: 19059941
Evidence for human microRNA-offset RNAs in small RNA sequencing data.
Langenberger D, Bermudez-Santana C, Hertel J, Hoffmann S, Khaitovich P, Stadler PF. Langenberger D, et al. Among authors: stadler pf. Bioinformatics. 2009 Sep 15;25(18):2298-301. doi: 10.1093/bioinformatics/btp419. Epub 2009 Jul 6. Bioinformatics. 2009. PMID: 19584066
Fast accessibility-based prediction of RNA-RNA interactions.
Tafer H, Amman F, Eggenhofer F, Stadler PF, Hofacker IL. Tafer H, et al. Among authors: stadler pf. Bioinformatics. 2011 Jul 15;27(14):1934-40. doi: 10.1093/bioinformatics/btr281. Epub 2011 May 18. Bioinformatics. 2011. PMID: 21593134
deepBlockAlign: a tool for aligning RNA-seq profiles of read block patterns.
Langenberger D, Pundhir S, Ekstrøm CT, Stadler PF, Hoffmann S, Gorodkin J. Langenberger D, et al. Among authors: stadler pf. Bioinformatics. 2012 Jan 1;28(1):17-24. doi: 10.1093/bioinformatics/btr598. Epub 2011 Nov 3. Bioinformatics. 2012. PMID: 22053076 Free PMC article.
Evolution of the let-7 microRNA family.
Hertel J, Bartschat S, Wintsche A, Otto C; Students of the Bioinformatics Computer Lab; Stadler PF. Hertel J, et al. Among authors: stadler pf. RNA Biol. 2012 Mar;9(3):231-41. doi: 10.4161/rna.18974. Epub 2012 Mar 1. RNA Biol. 2012. PMID: 22617875 Free PMC article.
605 results