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Impact of RNA degradation on fusion detection by RNA-seq.
Davila JI, Fadra NM, Wang X, McDonald AM, Nair AA, Crusan BR, Wu X, Blommel JH, Jen J, Rumilla KM, Jenkins RB, Aypar U, Klee EW, Kipp BR, Halling KC. Davila JI, et al. BMC Genomics. 2016 Oct 20;17(1):814. doi: 10.1186/s12864-016-3161-9. BMC Genomics. 2016. PMID: 27765019 Free PMC article.
Contraction of T cell richness in lung cancer brain metastases.
Mansfield AS, Ren H, Sutor S, Sarangi V, Nair A, Davila J, Elsbernd LR, Udell JB, Dronca RS, Park S, Markovic SN, Sun Z, Halling KC, Nevala WK, Aubry MC, Dong H, Jen J. Mansfield AS, et al. Among authors: davila j. Sci Rep. 2018 Feb 1;8(1):2171. doi: 10.1038/s41598-018-20622-8. Sci Rep. 2018. PMID: 29391594 Free PMC article.
Development and Verification of an RNA Sequencing (RNA-Seq) Assay for the Detection of Gene Fusions in Tumors.
Winters JL, Davila JI, McDonald AM, Nair AA, Fadra N, Wehrs RN, Thomas BC, Balcom JR, Jin L, Wu X, Voss JS, Klee EW, Oliver GR, Graham RP, Neff JL, Rumilla KM, Aypar U, Kipp BR, Jenkins RB, Jen J, Halling KC. Winters JL, et al. Among authors: davila ji. J Mol Diagn. 2018 Jul;20(4):495-511. doi: 10.1016/j.jmoldx.2018.03.007. Epub 2018 Jun 19. J Mol Diagn. 2018. PMID: 29929942 Free article.
RNA sequencing identifies a novel USP9X-USP6 promoter swap gene fusion in a primary aneurysmal bone cyst.
Blackburn PR, Davila JI, Jackson RA, Fadra N, Atiq MA, Pitel BA, Nair AA, VanDeWalker TJ, Hessler MG, Hovel SK, Wehrs RN, Fritchie KJ, Jenkins RB, Halling KC, Geiersbach KB. Blackburn PR, et al. Among authors: davila ji. Genes Chromosomes Cancer. 2019 Aug;58(8):589-594. doi: 10.1002/gcc.22742. Epub 2019 Mar 6. Genes Chromosomes Cancer. 2019. PMID: 30767316
Desmoplastic Infantile Ganglioglioma: A MAPK Pathway-Driven and Microglia/Macrophage-Rich Neuroepithelial Tumor.
Blessing MM, Blackburn PR, Krishnan C, Harrod VL, Barr Fritcher EG, Zysk CD, Jackson RA, Milosevic D, Nair AA, Davila JI, Balcom JR, Jenkins RB, Halling KC, Kipp BR, Nageswara Rao AA, Laack NN, Daniels DJ, Macon WR, Ida CM. Blessing MM, et al. Among authors: davila ji. J Neuropathol Exp Neurol. 2019 Nov 1;78(11):1011-1021. doi: 10.1093/jnen/nlz086. J Neuropathol Exp Neurol. 2019. PMID: 31562743
Uterine inflammatory myofibroblastic tumors in pregnant women with and without involvement of the placenta: a study of 6 cases with identification of a novel TIMP3-RET fusion.
Cheek EH, Fadra N, Jackson RA, Davila JI, Sukov WR, Uckerman MT, Clayton A, Keeney GL, Halling KC, Torres-Mora J, Schoolmeester JK. Cheek EH, et al. Among authors: davila ji. Hum Pathol. 2020 Mar;97:29-39. doi: 10.1016/j.humpath.2019.12.006. Epub 2020 Jan 7. Hum Pathol. 2020. PMID: 31917155
Xanthogranulomatous epithelial tumor: report of 6 cases of a novel, potentially deceptive lesion with a predilection for young women.
Fritchie KJ, Torres-Mora J, Inwards C, Thway K, Vaiyapuri S, Jackson R, Minn K, Halling K, Arndt C, Houdek MT, Wenger DE, Curry R, Thirumala S, Fisher C, Davila J, Folpe AL. Fritchie KJ, et al. Among authors: davila j. Mod Pathol. 2020 Oct;33(10):1889-1895. doi: 10.1038/s41379-020-0562-8. Epub 2020 May 15. Mod Pathol. 2020. PMID: 32415263 Free article.
789 results