Lima DB - Search Results

1

A quantitation module for isotope-labeled peptides integrated into PatternLab for proteomics.

Santos MDM, Lima DB, Silva ARF, Kurt LU, Clasen MA, Pinto AFM, Moresco JJ, Yates JR 3rd, Aquino P, Barbosa VC, Fischer JSG, Carvalho PC. Santos MDM, et al. Among authors: lima db. J Proteomics. 2019 Jun 30;202:103371. doi: 10.1016/j.jprot.2019.04.021. Epub 2019 Apr 26. J Proteomics. 2019. PMID: 31034900

2

Pinpointing differentially expressed domains in complex protein mixtures with the cloud service of PatternLab for Proteomics.

Leprevost FV, Lima DB, Crestani J, Perez-Riverol Y, Zanchin N, Barbosa VC, Carvalho PC. Leprevost FV, et al. Among authors: lima db. J Proteomics. 2013 Aug 26;89:179-82. doi: 10.1016/j.jprot.2013.06.013. Epub 2013 Jun 21. J Proteomics. 2013. PMID: 23796493

3

Comparative proteomic analysis of the aging soleus and extensor digitorum longus rat muscles using TMT labeling and mass spectrometry.

Chaves DF, Carvalho PC, Lima DB, Nicastro H, Lorenzeti FM, Siqueira-Filho M, Hirabara SM, Alves PH, Moresco JJ, Yates JR 3rd, Lancha AH Jr. Chaves DF, et al. Among authors: lima db. J Proteome Res. 2013 Oct 4;12(10):4532-46. doi: 10.1021/pr400644x. Epub 2013 Sep 25. J Proteome Res. 2013. PMID: 24001182 Free PMC article.

4

Exploring the proteomic landscape of a gastric cancer biopsy with the shotgun imaging analyzer.

Aquino PF, Lima DB, de Saldanha da Gama Fischer J, Melani RD, Nogueira FC, Chalub SR, Soares ER, Barbosa VC, Domont GB, Carvalho PC. Aquino PF, et al. Among authors: lima db. J Proteome Res. 2014 Jan 3;13(1):314-20. doi: 10.1021/pr400919k. Epub 2013 Nov 27. J Proteome Res. 2014. PMID: 24283986

5

PepExplorer: a similarity-driven tool for analyzing de novo sequencing results.

Leprevost FV, Valente RH, Lima DB, Perales J, Melani R, Yates JR 3rd, Barbosa VC, Junqueira M, Carvalho PC. Leprevost FV, et al. Among authors: lima db. Mol Cell Proteomics. 2014 Sep;13(9):2480-9. doi: 10.1074/mcp.M113.037002. Epub 2014 May 30. Mol Cell Proteomics. 2014. PMID: 24878498 Free PMC article.

6

The influence of iron on the proteomic profile of Chromobacterium violaceum.

Lima DC, Duarte FT, Medeiros VK, Lima DB, Carvalho PC, Bonatto D, Batistuzzo de Medeiros SR. Lima DC, et al. Among authors: lima db. BMC Microbiol. 2014 Oct 20;14:267. doi: 10.1186/s12866-014-0267-6. BMC Microbiol. 2014. PMID: 25361869 Free PMC article.

7

SIM-XL: A powerful and user-friendly tool for peptide cross-linking analysis.

Lima DB, de Lima TB, Balbuena TS, Neves-Ferreira AGC, Barbosa VC, Gozzo FC, Carvalho PC. Lima DB, et al. J Proteomics. 2015 Nov 3;129:51-55. doi: 10.1016/j.jprot.2015.01.013. Epub 2015 Jan 29. J Proteomics. 2015. PMID: 25638023

8

Integrated analysis of shotgun proteomic data with PatternLab for proteomics 4.0.

Carvalho PC, Lima DB, Leprevost FV, Santos MD, Fischer JS, Aquino PF, Moresco JJ, Yates JR 3rd, Barbosa VC. Carvalho PC, et al. Among authors: lima db. Nat Protoc. 2016 Jan;11(1):102-17. doi: 10.1038/nprot.2015.133. Epub 2015 Dec 10. Nat Protoc. 2016. PMID: 26658470 Free PMC article.

9

An Evaluation of the Crystal Structure of C-terminal Truncated Apolipoprotein A-I in Solution Reveals Structural Dynamics Related to Lipid Binding.

Melchior JT, Walker RG, Morris J, Jones MK, Segrest JP, Lima DB, Carvalho PC, Gozzo FC, Castleberry M, Thompson TB, Davidson WS. Melchior JT, et al. Among authors: lima db. J Biol Chem. 2016 Mar 4;291(10):5439-51. doi: 10.1074/jbc.M115.706093. Epub 2016 Jan 11. J Biol Chem. 2016. PMID: 26755744 Free PMC article.

10

DiagnoProt: a tool for discovery of new molecules by mass spectrometry.

Silva ARF, Lima DB, Leyva A, Duran R, Batthyany C, Aquino PF, Leal JC, Rodriguez JE, Domont GB, Santos MDM, Chamot-Rooke J, Barbosa VC, Carvalho PC. Silva ARF, et al. Among authors: lima db. Bioinformatics. 2017 Jun 15;33(12):1883-1885. doi: 10.1093/bioinformatics/btx093. Bioinformatics. 2017. PMID: 28186229

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