Tan R - Search Results

1

Integrated entropy-based approach for analyzing exons and introns in DNA sequences.

Li J, Zhang L, Li H, Ping Y, Xu Q, Wang R, Tan R, Wang Z, Liu B, Wang Y. Li J, et al. Among authors: tan r. BMC Bioinformatics. 2019 Jun 10;20(Suppl 8):283. doi: 10.1186/s12859-019-2772-y. BMC Bioinformatics. 2019. PMID: 31182012 Free PMC article.

2

A generalized topological entropy for analyzing the complexity of DNA sequences.

Jin S, Tan R, Jiang Q, Xu L, Peng J, Wang Y, Wang Y. Jin S, et al. Among authors: tan r. PLoS One. 2014 Feb 12;9(2):e88519. doi: 10.1371/journal.pone.0088519. eCollection 2014. PLoS One. 2014. PMID: 24533097 Free PMC article.

3

An evaluation of copy number variation detection tools from whole-exome sequencing data.

Tan R, Wang Y, Kleinstein SE, Liu Y, Zhu X, Guo H, Jiang Q, Allen AS, Zhu M. Tan R, et al. Hum Mutat. 2014 Jul;35(7):899-907. doi: 10.1002/humu.22537. Epub 2014 May 1. Hum Mutat. 2014. PMID: 24599517

4

A gradient-boosting approach for filtering de novo mutations in parent-offspring trios.

Liu Y, Li B, Tan R, Zhu X, Wang Y. Liu Y, et al. Among authors: tan r. Bioinformatics. 2014 Jul 1;30(13):1830-6. doi: 10.1093/bioinformatics/btu141. Epub 2014 Mar 10. Bioinformatics. 2014. PMID: 24618463 Free PMC article.

5

LncRNA2Target: a database for differentially expressed genes after lncRNA knockdown or overexpression.

Jiang Q, Wang J, Wu X, Ma R, Zhang T, Jin S, Han Z, Tan R, Peng J, Liu G, Li Y, Wang Y. Jiang Q, et al. Among authors: tan r. Nucleic Acids Res. 2015 Jan;43(Database issue):D193-6. doi: 10.1093/nar/gku1173. Epub 2014 Nov 15. Nucleic Acids Res. 2015. PMID: 25399422 Free PMC article.

6

Analyzing large-scale samples confirms the association between the rs1051730 polymorphism and lung cancer susceptibility.

Han Z, Jiang Q, Zhang T, Wu X, Ma R, Wang J, Bai Y, Wang R, Tan R, Wang Y. Han Z, et al. Among authors: tan r. Sci Rep. 2015 Oct 28;5:15642. doi: 10.1038/srep15642. Sci Rep. 2015. PMID: 26508385 Free PMC article.

7

ProbPFP: a multiple sequence alignment algorithm combining hidden Markov model optimized by particle swarm optimization with partition function.

Zhan Q, Wang N, Jin S, Tan R, Jiang Q, Wang Y. Zhan Q, et al. Among authors: tan r. BMC Bioinformatics. 2019 Nov 25;20(Suppl 18):573. doi: 10.1186/s12859-019-3132-7. BMC Bioinformatics. 2019. PMID: 31760933 Free PMC article.

8

LncRNA2Function: a comprehensive resource for functional investigation of human lncRNAs based on RNA-seq data.

Jiang Q, Ma R, Wang J, Wu X, Jin S, Peng J, Tan R, Zhang T, Li Y, Wang Y. Jiang Q, et al. Among authors: tan r. BMC Genomics. 2015;16 Suppl 3(Suppl 3):S2. doi: 10.1186/1471-2164-16-S3-S2. Epub 2015 Jan 29. BMC Genomics. 2015. PMID: 25707511 Free PMC article.

9

ERDS-exome: a Hybrid Approach for Copy Number Variant Detection from Whole-exome Sequencing Data.

Tan R, Wang J, Wu X, Juan L, Zheng L, Ma R, Zhan Q, Wang T, Jin S, Jiang Q, Wang Y. Tan R, et al. IEEE/ACM Trans Comput Biol Bioinform. 2017 Oct 4. doi: 10.1109/TCBB.2017.2758779. Online ahead of print. IEEE/ACM Trans Comput Biol Bioinform. 2017. PMID: 28981421

10

Dimension reduction, cell clustering, and cell-cell communication inference for single-cell transcriptomics with DcjComm.

Ding Q, Yang W, Xue G, Liu H, Cai Y, Que J, Jin X, Luo M, Pang F, Yang Y, Lin Y, Liu Y, Sun H, Tan R, Wang P, Xu Z, Jiang Q. Ding Q, et al. Among authors: tan r. Genome Biol. 2024 Sep 9;25(1):241. doi: 10.1186/s13059-024-03385-6. Genome Biol. 2024. PMID: 39252099 Free PMC article.

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