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Accurate prediction of disease-risk factors from volumetric medical scans by a deep vision model pre-trained with 2D scans.
Avram O, Durmus B, Rakocz N, Corradetti G, An U, Nittala MG, Terway P, Rudas A, Chen ZJ, Wakatsuki Y, Hirabayashi K, Velaga S, Tiosano L, Corvi F, Verma A, Karamat A, Lindenberg S, Oncel D, Almidani L, Hull V, Fasih-Ahmad S, Esmaeilkhanian H, Cannesson M, Wykoff CC, Rahmani E, Arnold CW, Zhou B, Zaitlen N, Gronau I, Sankararaman S, Chiang JN, Sadda SR, Halperin E. Avram O, et al. Among authors: sankararaman s. Nat Biomed Eng. 2024 Oct 1. doi: 10.1038/s41551-024-01257-9. Online ahead of print. Nat Biomed Eng. 2024. PMID: 39354052
Epigenetic patient stratification via contrastive machine learning refines hallmark biomarkers in minoritized children with asthma.
Gorla A, Witonsky J, Elhawary JR, Chen ZJ, Mefford J, Perez-Garcia J, Huntsman S, Hu D, Eng C, Woodruff PG, Sankararaman S, Ziv E, Flint J, Zaitlen N, Burchard E, Rahmani E. Gorla A, et al. Among authors: sankararaman s. Res Sq [Preprint]. 2024 Sep 13:rs.3.rs-5066762. doi: 10.21203/rs.3.rs-5066762/v1. Res Sq. 2024. PMID: 39315258 Free PMC article. Preprint.
VISTA: an integrated framework for structural variant discovery.
Sarwal V, Lee S, Yang J, Sankararaman S, Chaisson M, Eskin E, Mangul S. Sarwal V, et al. Among authors: sankararaman s. Brief Bioinform. 2024 Jul 25;25(5):bbae462. doi: 10.1093/bib/bbae462. Brief Bioinform. 2024. PMID: 39297879 Free PMC article.
249 results