Frei D - Search Results

1

Long-read based de novo assembly of low-complexity metagenome samples results in finished genomes and reveals insights into strain diversity and an active phage system.

Somerville V, Lutz S, Schmid M, Frei D, Moser A, Irmler S, Frey JE, Ahrens CH. Somerville V, et al. Among authors: frei d. BMC Microbiol. 2019 Jun 25;19(1):143. doi: 10.1186/s12866-019-1500-0. BMC Microbiol. 2019. PMID: 31238873 Free PMC article.

2

Complex relation between triazine-susceptible phenotype and genotype in the weed Senecio vulgaris may be caused by chloroplast DNA polymorphism.

Frey JE, Müller-Schärer H, Frey B, Frei D. Frey JE, et al. Among authors: frei d. Theor Appl Genet. 1999 Aug;99(3-4):578-86. doi: 10.1007/s001220051271. Theor Appl Genet. 1999. PMID: 22665192

3

Pushing the limits of de novo genome assembly for complex prokaryotic genomes harboring very long, near identical repeats.

Schmid M, Frei D, Patrignani A, Schlapbach R, Frey JE, Remus-Emsermann MNP, Ahrens CH. Schmid M, et al. Among authors: frei d. Nucleic Acids Res. 2018 Sep 28;46(17):8953-8965. doi: 10.1093/nar/gky726. Nucleic Acids Res. 2018. PMID: 30137508 Free PMC article.

4

Discovery of novel community-relevant small proteins in a simplified human intestinal microbiome.

Petruschke H, Schori C, Canzler S, Riesbeck S, Poehlein A, Daniel R, Frei D, Segessemann T, Zimmerman J, Marinos G, Kaleta C, Jehmlich N, Ahrens CH, von Bergen M. Petruschke H, et al. Among authors: frei d. Microbiome. 2021 Feb 23;9(1):55. doi: 10.1186/s40168-020-00981-z. Microbiome. 2021. PMID: 33622394 Free PMC article.

5

Ultralong Oxford Nanopore Reads Enable the Development of a Reference-Grade Perennial Ryegrass Genome Assembly.

Frei D, Veekman E, Grogg D, Stoffel-Studer I, Morishima A, Shimizu-Inatsugi R, Yates S, Shimizu KK, Frey JE, Studer B, Copetti D. Frei D, et al. Genome Biol Evol. 2021 Aug 3;13(8):evab159. doi: 10.1093/gbe/evab159. Genome Biol Evol. 2021. PMID: 34247248 Free PMC article.

6

Genome sequence data of the antagonistic soil-borne yeast Cyberlindnera sargentensis (SHA 17.2).

Rueda-Mejia MP, Nägeli L, Lutz S, Ortiz-Merino RA, Frei D, Frey JE, Wolfe KH, Ahrens CH, Freimoser FM. Rueda-Mejia MP, et al. Among authors: frei d. Data Brief. 2022 Jan 5;40:107799. doi: 10.1016/j.dib.2022.107799. eCollection 2022 Feb. Data Brief. 2022. PMID: 35071701 Free PMC article.

7

Low-Input High-Molecular-Weight DNA Extraction for Long-Read Sequencing From Plants of Diverse Families.

Russo A, Mayjonade B, Frei D, Potente G, Kellenberger RT, Frachon L, Copetti D, Studer B, Frey JE, Grossniklaus U, Schlüter PM. Russo A, et al. Among authors: frei d. Front Plant Sci. 2022 May 19;13:883897. doi: 10.3389/fpls.2022.883897. eCollection 2022. Front Plant Sci. 2022. PMID: 35665166 Free PMC article.

8

Next generation biosecurity: Towards genome based identification to prevent spread of agronomic pests and pathogens using nanopore sequencing.

Frey JE, Frey B, Frei D, Blaser S, Gueuning M, Bühlmann A. Frey JE, et al. Among authors: frei d. PLoS One. 2022 Jul 25;17(7):e0270897. doi: 10.1371/journal.pone.0270897. eCollection 2022. PLoS One. 2022. PMID: 35877652 Free PMC article.

9

Erratum to: Ultralong Oxford Nanopore Reads Enable the Development of a Reference-Grade Perennial Ryegrass Genome Assembly.

Frei D, Veekman E, Grogg D, Stoffel-Studer I, Morishima A, Shimizu-Inatsugi R, Yates S, Shimizu KK, Frey JE, Studer B, Copetti D. Frei D, et al. Genome Biol Evol. 2021 Oct 1;13(10):evab203. doi: 10.1093/gbe/evab203. Genome Biol Evol. 2021. PMID: 34695194 Free PMC article. No abstract available.

10

First screening for Brachyspira hampsonii in Swiss pigs applying a new high resolution melting assay.

Scherrer S, Borgström A, Frei D, Wittenbrink MM. Scherrer S, et al. Among authors: frei d. Vet Microbiol. 2016 Sep 25;193:17-21. doi: 10.1016/j.vetmic.2016.07.020. Epub 2016 Jul 29. Vet Microbiol. 2016. PMID: 27599925

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