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Measuring and mitigating PCR bias in microbiota datasets.
Silverman JD, Bloom RJ, Jiang S, Durand HK, Dallow E, Mukherjee S, David LA. Silverman JD, et al. PLoS Comput Biol. 2021 Jul 6;17(7):e1009113. doi: 10.1371/journal.pcbi.1009113. eCollection 2021 Jul. PLoS Comput Biol. 2021. PMID: 34228723 Free PMC article.
Human Gut Microbiota Predicts Susceptibility to Vibrio cholerae Infection.
Midani FS, Weil AA, Chowdhury F, Begum YA, Khan AI, Debela MD, Durand HK, Reese AT, Nimmagadda SN, Silverman JD, Ellis CN, Ryan ET, Calderwood SB, Harris JB, Qadri F, David LA, LaRocque RC. Midani FS, et al. Among authors: silverman jd. J Infect Dis. 2018 Jul 13;218(4):645-653. doi: 10.1093/infdis/jiy192. J Infect Dis. 2018. PMID: 29659916 Free PMC article.
Naught all zeros in sequence count data are the same.
Silverman JD, Roche K, Mukherjee S, David LA. Silverman JD, et al. Comput Struct Biotechnol J. 2020 Sep 28;18:2789-2798. doi: 10.1016/j.csbj.2020.09.014. eCollection 2020. Comput Struct Biotechnol J. 2020. PMID: 33101615 Free PMC article. Review.
58 results