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Page 1
Samovar: Single-Sample Mosaic Single-Nucleotide Variant Calling with Linked Reads.
Darby CA, Fitch JR, Brennan PJ, Kelly BJ, Bir N, Magrini V, Leonard J, Cottrell CE, Gastier-Foster JM, Wilson RK, Mardis ER, White P, Langmead B, Schatz MC. Darby CA, et al. iScience. 2019 Aug 30;18:1-10. doi: 10.1016/j.isci.2019.05.037. Epub 2019 May 29. iScience. 2019. PMID: 31271967 Free PMC article.
Clonal Hematopoiesis Before, During, and After Human Spaceflight.
Mencia-Trinchant N, MacKay MJ, Chin C, Afshinnekoo E, Foox J, Meydan C, Butler D, Mozsary C, Vernice NA, Darby C, Schatz MC, Bailey SM, Melnick AM, Guzman ML, Bolton K, Braunstein LZ, Garrett-Bakelman F, Levine RL, Hassane DC, Mason CE. Mencia-Trinchant N, et al. Cell Rep. 2020 Dec 8;33(10):108458. doi: 10.1016/j.celrep.2020.108458. Epub 2020 Nov 25. Cell Rep. 2020. PMID: 33242405 Free PMC article.
Clonal hematopoiesis before, during, and after human spaceflight.
Mencia-Trinchant N, MacKay MJ, Chin C, Afshinnekoo E, Foox J, Meydan C, Butler D, Mozsary C, Vernice NA, Darby C, Schatz MC, Bailey SM, Melnick AM, Guzman ML, Bolton K, Braunstein LZ, Garrett-Bakelman F, Levine RL, Hassane DC, Mason CE. Mencia-Trinchant N, et al. Cell Rep. 2021 Feb 9;34(6):108740. doi: 10.1016/j.celrep.2021.108740. Cell Rep. 2021. PMID: 33567281 Free article. No abstract available.
Xenolog classification.
Darby CA, Stolzer M, Ropp PJ, Barker D, Durand D. Darby CA, et al. Bioinformatics. 2017 Mar 1;33(5):640-649. doi: 10.1093/bioinformatics/btw686. Bioinformatics. 2017. PMID: 27998934 Free PMC article.
Integrated analysis of multimodal single-cell data.
Hao Y, Hao S, Andersen-Nissen E, Mauck WM 3rd, Zheng S, Butler A, Lee MJ, Wilk AJ, Darby C, Zager M, Hoffman P, Stoeckius M, Papalexi E, Mimitou EP, Jain J, Srivastava A, Stuart T, Fleming LM, Yeung B, Rogers AJ, McElrath JM, Blish CA, Gottardo R, Smibert P, Satija R. Hao Y, et al. Among authors: darby c. Cell. 2021 Jun 24;184(13):3573-3587.e29. doi: 10.1016/j.cell.2021.04.048. Epub 2021 May 31. Cell. 2021. PMID: 34062119 Free PMC article.
Correction for Carter et al., "Design and Characterization of a Computationally Optimized Broadly Reactive Hemagglutinin Vaccine for H1N1 Influenza Viruses".
Carter DM, Darby CA, Lefoley BC, Crevar CJ, Alefantis T, Oomen R, Anderson SF, Strugnell T, Cortés-Garcia G, Vogel TU, Parrington M, Kleanthous H, Ross TM. Carter DM, et al. Among authors: darby ca. J Virol. 2024 Jul 23;98(7):e0181323. doi: 10.1128/jvi.01813-23. Epub 2024 May 31. J Virol. 2024. PMID: 38819164 Free PMC article. No abstract available.
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