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Page 1
TFutils: Data structures for transcription factor bioinformatics.
Stubbs BJ, Gopaulakrishnan S, Glass K, Pochet N, Everaert C, Raby B, Carey V. Stubbs BJ, et al. Among authors: gopaulakrishnan s. F1000Res. 2019 Feb 5;8:152. doi: 10.12688/f1000research.17976.2. eCollection 2019. F1000Res. 2019. PMID: 31297189 Free PMC article.
Robustness and reproducibility of simple and complex synthetic logic circuit designs using a DBTL loop.
Cummins B, Vrana J, Moseley RC, Eramian H, Deckard A, Fontanarrosa P, Bryce D, Weston M, Zheng G, Nowak J, Motta FC, Eslami M, Johnson KL, Goldman RP, Myers CJ, Johnson T, Vaughn MW, Gaffney N, Urrutia J, Gopaulakrishnan S, Biggers V, Higa TR, Mosqueda LA, Gameiro M, Gedeon T, Mischaikow K, Beal J, Bartley B, Mitchell T, Nguyen TT, Roehner N, Haase SB. Cummins B, et al. Among authors: gopaulakrishnan s. Synth Biol (Oxf). 2023 Mar 28;8(1):ysad005. doi: 10.1093/synbio/ysad005. eCollection 2023. Synth Biol (Oxf). 2023. PMID: 37073283 Free PMC article.
Highly-automated, high-throughput replication of yeast-based logic circuit design assessments.
Goldman RP, Moseley R, Roehner N, Cummins B, Vrana JD, Clowers KJ, Bryce D, Beal J, DeHaven M, Nowak J, Higa T, Biggers V, Lee P, Hunt JP, Mosqueda L, Haase SB, Weston M, Zheng G, Deckard A, Gopaulakrishnan S, Stubbs JF, Gaffney NI, Vaughn MW, Maheshri N, Mikhalev E, Bartley B, Markeloff R, Mitchell T, Nguyen T, Sumorok D, Walczak N, Myers C, Zundel Z, Hatch B, Scholz J, Colonna-Romano J. Goldman RP, et al. Among authors: gopaulakrishnan s. Synth Biol (Oxf). 2022 Oct 6;7(1):ysac018. doi: 10.1093/synbio/ysac018. eCollection 2022. Synth Biol (Oxf). 2022. PMID: 36285185 Free PMC article.