Campbell JD - Search Results

1

Pipeliner: A Nextflow-Based Framework for the Definition of Sequencing Data Processing Pipelines.

Federico A, Karagiannis T, Karri K, Kishore D, Koga Y, Campbell JD, Monti S. Federico A, et al. Among authors: campbell jd. Front Genet. 2019 Jun 28;10:614. doi: 10.3389/fgene.2019.00614. eCollection 2019. Front Genet. 2019. PMID: 31316552 Free PMC article.

2

Assessment of microRNA differential expression and detection in multiplexed small RNA sequencing data.

Campbell JD, Liu G, Luo L, Xiao J, Gerrein J, Juan-Guardela B, Tedrow J, Alekseyev YO, Yang IV, Correll M, Geraci M, Quackenbush J, Sciurba F, Schwartz DA, Kaminski N, Johnson WE, Monti S, Spira A, Beane J, Lenburg ME. Campbell JD, et al. RNA. 2015 Feb;21(2):164-71. doi: 10.1261/rna.046060.114. Epub 2014 Dec 17. RNA. 2015. PMID: 25519487 Free PMC article.

3

Assessment of a Highly Multiplexed RNA Sequencing Platform and Comparison to Existing High-Throughput Gene Expression Profiling Techniques.

Reed E, Moses E, Xiao X, Liu G, Campbell J, Perdomo C, Monti S. Reed E, et al. Front Genet. 2019 Mar 5;10:150. doi: 10.3389/fgene.2019.00150. eCollection 2019. Front Genet. 2019. PMID: 30891063 Free PMC article.

4

Decontamination of ambient RNA in single-cell RNA-seq with DecontX.

Yang S, Corbett SE, Koga Y, Wang Z, Johnson WE, Yajima M, Campbell JD. Yang S, et al. Among authors: campbell jd. Genome Biol. 2020 Mar 5;21(1):57. doi: 10.1186/s13059-020-1950-6. Genome Biol. 2020. PMID: 32138770 Free PMC article.

5

Genomic Profiling of Prostate Cancers from Men with African and European Ancestry.

Koga Y, Song H, Chalmers ZR, Newberg J, Kim E, Carrot-Zhang J, Piou D, Polak P, Abdulkadir SA, Ziv E, Meyerson M, Frampton GM, Campbell JD, Huang FW. Koga Y, et al. Among authors: campbell jd. Clin Cancer Res. 2020 Sep 1;26(17):4651-4660. doi: 10.1158/1078-0432.CCR-19-4112. Epub 2020 Jul 10. Clin Cancer Res. 2020. PMID: 32651179 Free PMC article.

6

Whole-genome doubling confers unique genetic vulnerabilities on tumour cells.

Quinton RJ, DiDomizio A, Vittoria MA, Kotýnková K, Ticas CJ, Patel S, Koga Y, Vakhshoorzadeh J, Hermance N, Kuroda TS, Parulekar N, Taylor AM, Manning AL, Campbell JD, Ganem NJ. Quinton RJ, et al. Among authors: campbell jd. Nature. 2021 Feb;590(7846):492-497. doi: 10.1038/s41586-020-03133-3. Epub 2021 Jan 27. Nature. 2021. PMID: 33505027 Free PMC article.

7

Publisher Correction: Whole-genome doubling confers unique genetic vulnerabilities on tumour cells.

Quinton RJ, DiDomizio A, Vittoria MA, Kotýnková K, Ticas CJ, Patel S, Koga Y, Vakhshoorzadeh J, Hermance N, Kuroda TS, Parulekar N, Taylor AM, Manning AL, Campbell JD, Ganem NJ. Quinton RJ, et al. Among authors: campbell jd. Nature. 2021 May;593(7860):E15. doi: 10.1038/s41586-021-03591-3. Nature. 2021. PMID: 33976417 No abstract available.

8

Elevated T cell repertoire diversity is associated with progression of lung squamous cell premalignant lesions.

Maoz A, Merenstein C, Koga Y, Potter A, Gower AC, Liu G, Zhang S, Liu H, Stevenson C, Spira A, Reid ME, Campbell JD, Mazzilli SA, Lenburg ME, Beane J. Maoz A, et al. Among authors: campbell jd. J Immunother Cancer. 2021 Sep;9(9):e002647. doi: 10.1136/jitc-2021-002647. J Immunother Cancer. 2021. PMID: 34580161 Free PMC article.

9

Inhibition of LSD1 Attenuates Oral Cancer Development and Promotes Therapeutic Efficacy of Immune Checkpoint Blockade and YAP/TAZ Inhibition.

Alhousami T, Diny M, Ali F, Shin J, Kumar G, Kumar V, Campbell JD, Noonan V, Hanna GJ, Denis GV, Monti S, Kukuruzinska MA, Varelas X, Bais MV. Alhousami T, et al. Among authors: campbell jd. Mol Cancer Res. 2022 May 4;20(5):712-721. doi: 10.1158/1541-7786.MCR-21-0310. Mol Cancer Res. 2022. PMID: 35105672 Free PMC article.

10

Comprehensive generation, visualization, and reporting of quality control metrics for single-cell RNA sequencing data.

Hong R, Koga Y, Bandyadka S, Leshchyk A, Wang Y, Akavoor V, Cao X, Sarfraz I, Wang Z, Alabdullatif S, Jansen F, Yajima M, Johnson WE, Campbell JD. Hong R, et al. Among authors: campbell jd. Nat Commun. 2022 Mar 30;13(1):1688. doi: 10.1038/s41467-022-29212-9. Nat Commun. 2022. PMID: 35354805 Free PMC article.

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