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Metabolomics Analytics Workflow for Epidemiological Research: Perspectives from the Consortium of Metabolomics Studies (COMETS).
Playdon MC, Joshi AD, Tabung FK, Cheng S, Henglin M, Kim A, Lin T, van Roekel EH, Huang J, Krumsiek J, Wang Y, Mathé E, Temprosa M, Moore S, Chawes B, Eliassen AH, Gsur A, Gunter MJ, Harada S, Langenberg C, Oresic M, Perng W, Seow WJ, Zeleznik OA. Playdon MC, et al. Among authors: krumsiek j. Metabolites. 2019 Jul 17;9(7):145. doi: 10.3390/metabo9070145. Metabolites. 2019. PMID: 31319517 Free PMC article.
Secretome profiling reveals acute changes in oxidative stress, brain homeostasis, and coagulation following short-duration spaceflight.
Houerbi N, Kim J, Overbey EG, Batra R, Schweickart A, Patras L, Lucotti S, Ryon KA, Najjar D, Meydan C, Damle N, Chin C, Narayanan SA, Guarnieri JW, Widjaja G, Beheshti A, Tobias G, Vatter F, Hirschberg JW, Kleinman A, Afshin EE, MacKay M, Chen Q, Miller D, Gajadhar AS, Williamson L, Tandel P, Yang Q, Chu J, Benz R, Siddiqui A, Hornburg D, Gross S, Shirah B, Krumsiek J, Mateus J, Mao X, Matei I, Mason CE. Houerbi N, et al. Among authors: krumsiek j. Nat Commun. 2024 Jun 11;15(1):4862. doi: 10.1038/s41467-024-48841-w. Nat Commun. 2024. PMID: 38862464 Free PMC article.
Circular-SWAT for deep learning based diagnostic classification of Alzheimer's disease: application to metabolome data.
Jo T, Kim J, Bice P, Huynh K, Wang T, Arnold M, Meikle PJ, Giles C, Kaddurah-Daouk R, Saykin AJ, Nho K; Alzheimer's Disease Metabolomics Consortium (ADMC); Alzheimer's Disease Neuroimaging Initiative (ADNI). Jo T, et al. EBioMedicine. 2023 Nov;97:104820. doi: 10.1016/j.ebiom.2023.104820. Epub 2023 Oct 7. EBioMedicine. 2023. PMID: 37806288 Free PMC article.
Characterization of missing values in untargeted MS-based metabolomics data and evaluation of missing data handling strategies.
Do KT, Wahl S, Raffler J, Molnos S, Laimighofer M, Adamski J, Suhre K, Strauch K, Peters A, Gieger C, Langenberg C, Stewart ID, Theis FJ, Grallert H, Kastenmüller G, Krumsiek J. Do KT, et al. Among authors: krumsiek j. Metabolomics. 2018 Sep 20;14(10):128. doi: 10.1007/s11306-018-1420-2. Metabolomics. 2018. PMID: 30830398 Free PMC article.
Integration of Metabolomic and Other Omics Data in Population-Based Study Designs: An Epidemiological Perspective.
Chu SH, Huang M, Kelly RS, Benedetti E, Siddiqui JK, Zeleznik OA, Pereira A, Herrington D, Wheelock CE, Krumsiek J, McGeachie M, Moore SC, Kraft P, Mathé E, Lasky-Su J; Consortium of Metabolomics Studies Statistics Working Group. Chu SH, et al. Among authors: krumsiek j. Metabolites. 2019 Jun 18;9(6):117. doi: 10.3390/metabo9060117. Metabolites. 2019. PMID: 31216675 Free PMC article. Review.
A Workflow for Missing Values Imputation of Untargeted Metabolomics Data.
Faquih T, van Smeden M, Luo J, le Cessie S, Kastenmüller G, Krumsiek J, Noordam R, van Heemst D, Rosendaal FR, van Hylckama Vlieg A, Willems van Dijk K, Mook-Kanamori DO. Faquih T, et al. Among authors: krumsiek j. Metabolites. 2020 Nov 26;10(12):486. doi: 10.3390/metabo10120486. Metabolites. 2020. PMID: 33256233 Free PMC article.
Systematic Evaluation of Normalization Methods for Glycomics Data Based on Performance of Network Inference.
Benedetti E, Gerstner N, Pučić-Baković M, Keser T, Reiding KR, Ruhaak LR, Štambuk T, Selman MHJ, Rudan I, Polašek O, Hayward C, Beekman M, Slagboom E, Wuhrer M, Dunlop MG, Lauc G, Krumsiek J. Benedetti E, et al. Among authors: krumsiek j. Metabolites. 2020 Jul 2;10(7):271. doi: 10.3390/metabo10070271. Metabolites. 2020. PMID: 32630764 Free PMC article.
145 results