Laederach A - Search Results

1

The structure of the influenza A virus genome.

Dadonaite B, Gilbertson B, Knight ML, Trifkovic S, Rockman S, Laederach A, Brown LE, Fodor E, Bauer DLV. Dadonaite B, et al. Among authors: laederach a. Nat Microbiol. 2019 Nov;4(11):1781-1789. doi: 10.1038/s41564-019-0513-7. Epub 2019 Jul 22. Nat Microbiol. 2019. PMID: 31332385 Free PMC article.

2

Orb2 enables rare-codon-enriched mRNA expression during Drosophila neuron differentiation.

Stewart RK, Nguyen P, Laederach A, Volkan PC, Sawyer JK, Fox DT. Stewart RK, et al. Among authors: laederach a. bioRxiv [Preprint]. 2023 Jul 27:2023.07.26.550700. doi: 10.1101/2023.07.26.550700. bioRxiv. 2023. Update in: Nat Commun. 2024 Jun 20;15(1):5270. doi: 10.1038/s41467-024-48344-8 PMID: 37546801 Free PMC article. Updated. Preprint.

3

Abolished frameshifting for predicted structure-stabilizing SARS-CoV-2 mutants: Implications to alternative conformations and their statistical structural analyses.

Dey A, Yan S, Schlick T, Laederach A. Dey A, et al. Among authors: laederach a. bioRxiv [Preprint]. 2024 Mar 29:2024.03.28.586935. doi: 10.1101/2024.03.28.586935. bioRxiv. 2024. Update in: RNA. 2024 Oct 16;30(11):1437-1450. doi: 10.1261/rna.080035.124 PMID: 38585719 Free PMC article. Updated. Preprint.

4

Molecular biology: A second layer of information in RNA.

Ramos SB, Laederach A. Ramos SB, et al. Among authors: laederach a. Nature. 2014 Jan 30;505(7485):621-2. doi: 10.1038/505621a. Nature. 2014. PMID: 24476882 Free PMC article.

5

Classification of RNA structure change by 'gazing' at experimental data.

Woods CT, Laederach A. Woods CT, et al. Among authors: laederach a. Bioinformatics. 2017 Jun 1;33(11):1647-1655. doi: 10.1093/bioinformatics/btx041. Bioinformatics. 2017. PMID: 28130241 Free PMC article.

6

Allele-specific SHAPE-MaP assessment of the effects of somatic variation and protein binding on mRNA structure.

Lackey L, Coria A, Woods C, McArthur E, Laederach A. Lackey L, et al. Among authors: laederach a. RNA. 2018 Apr;24(4):513-528. doi: 10.1261/rna.064469.117. Epub 2018 Jan 9. RNA. 2018. PMID: 29317542 Free PMC article.

7

Using SHAPE-MaP To Model RNA Secondary Structure and Identify 3'UTR Variation in Chikungunya Virus.

Madden EA, Plante KS, Morrison CR, Kutchko KM, Sanders W, Long KM, Taft-Benz S, Cruz Cisneros MC, White AM, Sarkar S, Reynolds G, Vincent HA, Laederach A, Moorman NJ, Heise MT. Madden EA, et al. Among authors: laederach a. J Virol. 2020 Nov 23;94(24):e00701-20. doi: 10.1128/JVI.00701-20. Print 2020 Nov 23. J Virol. 2020. PMID: 32999019 Free PMC article.

8

Rotavirus RNA chaperone mediates global transcriptome-wide increase in RNA backbone flexibility.

Coria A, Wienecke A, Knight ML, Desirò D, Laederach A, Borodavka A. Coria A, et al. Among authors: laederach a. Nucleic Acids Res. 2022 Sep 23;50(17):10078-10092. doi: 10.1093/nar/gkac738. Nucleic Acids Res. 2022. PMID: 36062555 Free PMC article.

9

Structural effects of linkage disequilibrium on the transcriptome.

Martin JS, Halvorsen M, Davis-Neulander L, Ritz J, Gopinath C, Beauregard A, Laederach A. Martin JS, et al. Among authors: laederach a. RNA. 2012 Jan;18(1):77-87. doi: 10.1261/rna.029900.111. Epub 2011 Nov 22. RNA. 2012. PMID: 22109839 Free PMC article.

10

Evaluating our ability to predict the structural disruption of RNA by SNPs.

Ritz J, Martin JS, Laederach A. Ritz J, et al. Among authors: laederach a. BMC Genomics. 2012 Jun 18;13 Suppl 4(Suppl 4):S6. doi: 10.1186/1471-2164-13-S4-S6. BMC Genomics. 2012. PMID: 22759654 Free PMC article.

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