Tse D - Search Results

1

Large dataset enables prediction of repair after CRISPR-Cas9 editing in primary T cells.

Leenay RT, Aghazadeh A, Hiatt J, Tse D, Roth TL, Apathy R, Shifrut E, Hultquist JF, Krogan N, Wu Z, Cirolia G, Canaj H, Leonetti MD, Marson A, May AP, Zou J. Leenay RT, et al. Among authors: tse d. Nat Biotechnol. 2019 Sep;37(9):1034-1037. doi: 10.1038/s41587-019-0203-2. Epub 2019 Jul 29. Nat Biotechnol. 2019. PMID: 31359007 Free PMC article.

2

Determining sequencing depth in a single-cell RNA-seq experiment.

Zhang MJ, Ntranos V, Tse D. Zhang MJ, et al. Among authors: tse d. Nat Commun. 2020 Feb 7;11(1):774. doi: 10.1038/s41467-020-14482-y. Nat Commun. 2020. PMID: 32034137 Free PMC article.

3

Optimal compressed representation of high throughput sequence data via light assembly.

Ginart AA, Hui J, Zhu K, Numanagić I, Courtade TA, Sahinalp SC, Tse DN. Ginart AA, et al. Nat Commun. 2018 Feb 8;9(1):566. doi: 10.1038/s41467-017-02480-6. Nat Commun. 2018. PMID: 29422526 Free PMC article.

4

Longitudinal multi-omics of host-microbe dynamics in prediabetes.

Zhou W, Sailani MR, Contrepois K, Zhou Y, Ahadi S, Leopold SR, Zhang MJ, Rao V, Avina M, Mishra T, Johnson J, Lee-McMullen B, Chen S, Metwally AA, Tran TDB, Nguyen H, Zhou X, Albright B, Hong BY, Petersen L, Bautista E, Hanson B, Chen L, Spakowicz D, Bahmani A, Salins D, Leopold B, Ashland M, Dagan-Rosenfeld O, Rego S, Limcaoco P, Colbert E, Allister C, Perelman D, Craig C, Wei E, Chaib H, Hornburg D, Dunn J, Liang L, Rose SMS, Kukurba K, Piening B, Rost H, Tse D, McLaughlin T, Sodergren E, Weinstock GM, Snyder M. Zhou W, et al. Among authors: tse d. Nature. 2019 May;569(7758):663-671. doi: 10.1038/s41586-019-1236-x. Epub 2019 May 29. Nature. 2019. PMID: 31142858 Free PMC article.

5

Valid Post-clustering Differential Analysis for Single-Cell RNA-Seq.

Zhang JM, Kamath GM, Tse DN. Zhang JM, et al. Cell Syst. 2019 Oct 23;9(4):383-392.e6. doi: 10.1016/j.cels.2019.07.012. Epub 2019 Sep 11. Cell Syst. 2019. PMID: 31521605 Free PMC article.

6

Publisher Correction: Optimal compressed representation of high throughput sequence data via light assembly.

Ginart AA, Hui J, Zhu K, Numanagić I, Courtade TA, Sahinalp SC, Tse DN. Ginart AA, et al. Nat Commun. 2018 Apr 26;9(1):1755. doi: 10.1038/s41467-018-03711-0. Nat Commun. 2018. PMID: 29700301 Free PMC article.

7

OASIS: An interpretable, finite-sample valid alternative to Pearson's X² for scientific discovery.

Baharav TZ, Tse D, Salzman J. Baharav TZ, et al. Among authors: tse d. Proc Natl Acad Sci U S A. 2024 Apr 9;121(15):e2304671121. doi: 10.1073/pnas.2304671121. Epub 2024 Apr 2. Proc Natl Acad Sci U S A. 2024. PMID: 38564640 Free PMC article.

8

HINGE: long-read assembly achieves optimal repeat resolution.

Kamath GM, Shomorony I, Xia F, Courtade TA, Tse DN. Kamath GM, et al. Genome Res. 2017 May;27(5):747-756. doi: 10.1101/gr.216465.116. Epub 2017 Mar 20. Genome Res. 2017. PMID: 28320918 Free PMC article.

9

Fast and accurate single-cell RNA-seq analysis by clustering of transcript-compatibility counts.

Ntranos V, Kamath GM, Zhang JM, Pachter L, Tse DN. Ntranos V, et al. Genome Biol. 2016 May 26;17(1):112. doi: 10.1186/s13059-016-0970-8. Genome Biol. 2016. PMID: 27230763 Free PMC article.

10

Information-optimal genome assembly via sparse read-overlap graphs.

Shomorony I, Kim SH, Courtade TA, Tse DN. Shomorony I, et al. Bioinformatics. 2016 Sep 1;32(17):i494-i502. doi: 10.1093/bioinformatics/btw450. Bioinformatics. 2016. PMID: 27587667

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