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Transform-MinER: transforming molecules in enzyme reactions.
Tyzack JD, Ribeiro AJM, Borkakoti N, Thornton JM. Tyzack JD, et al. Among authors: ribeiro ajm. Bioinformatics. 2018 Oct 15;34(20):3597-3599. doi: 10.1093/bioinformatics/bty394. Bioinformatics. 2018. PMID: 29762650 Free PMC article.
Exploring Chemical Biosynthetic Design Space with Transform-MinER.
Tyzack JD, Ribeiro AJM, Borkakoti N, Thornton JM. Tyzack JD, et al. Among authors: ribeiro ajm. ACS Synth Biol. 2019 Nov 15;8(11):2494-2506. doi: 10.1021/acssynbio.9b00105. Epub 2019 Nov 5. ACS Synth Biol. 2019. PMID: 31647630 Free article.
GRaSP: a graph-based residue neighborhood strategy to predict binding sites.
Santana CA, Silveira SA, Moraes JPA, Izidoro SC, de Melo-Minardi RC, Ribeiro AJM, Tyzack JD, Borkakoti N, Thornton JM. Santana CA, et al. Among authors: ribeiro ajm. Bioinformatics. 2020 Dec 30;36(Suppl_2):i726-i734. doi: 10.1093/bioinformatics/btaa805. Bioinformatics. 2020. PMID: 33381849
The Enzyme Portal: an integrative tool for enzyme information and analysis.
Zaru R, Onwubiko J, Ribeiro AJM, Cochrane K, Tyzack JD, Muthukrishnan V, Pravda L, Thornton JM, O'Donovan C, Velanker S, Orchard S, Leach A, Martin MJ. Zaru R, et al. Among authors: ribeiro ajm. FEBS J. 2022 Oct;289(19):5875-5890. doi: 10.1111/febs.16168. Epub 2021 Sep 3. FEBS J. 2022. PMID: 34437766 Free article. Review.
31 results