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Page 1
Contrasting patterns of longitudinal population dynamics and antimicrobial resistance mechanisms in two priority bacterial pathogens over 7 years in a single center.
Ellington MJ, Heinz E, Wailan AM, Dorman MJ, de Goffau M, Cain AK, Henson SP, Gleadall N, Boinett CJ, Dougan G, Brown NM, Woodford N, Parkhill J, Török ME, Peacock SJ, Thomson NR. Ellington MJ, et al. Among authors: cain ak. Genome Biol. 2019 Sep 2;20(1):184. doi: 10.1186/s13059-019-1785-1. Genome Biol. 2019. PMID: 31477167 Free PMC article.
A CRISPR view of genome sequences.
Cain AK, Boinett CJ. Cain AK, et al. Nat Rev Microbiol. 2013 Apr;11(4):226. doi: 10.1038/nrmicro2997. Epub 2013 Mar 11. Nat Rev Microbiol. 2013. PMID: 23474684 No abstract available.
Recombination: genomic mix 'n' match.
Boinett CJ, Cain AK. Boinett CJ, et al. Among authors: cain ak. Nat Rev Microbiol. 2014 Dec;12(12):795. doi: 10.1038/nrmicro3388. Epub 2014 Nov 10. Nat Rev Microbiol. 2014. PMID: 25383603 No abstract available.
A high-resolution genomic analysis of multidrug-resistant hospital outbreaks of Klebsiella pneumoniae.
Chung The H, Karkey A, Pham Thanh D, Boinett CJ, Cain AK, Ellington M, Baker KS, Dongol S, Thompson C, Harris SR, Jombart T, Le Thi Phuong T, Tran Do Hoang N, Ha Thanh T, Shretha S, Joshi S, Basnyat B, Thwaites G, Thomson NR, Rabaa MA, Baker S. Chung The H, et al. Among authors: cain ak. EMBO Mol Med. 2015 Mar;7(3):227-39. doi: 10.15252/emmm.201404767. EMBO Mol Med. 2015. PMID: 25712531 Free PMC article.
Phylogeographical analysis of the dominant multidrug-resistant H58 clade of Salmonella Typhi identifies inter- and intracontinental transmission events.
Wong VK, Baker S, Pickard DJ, Parkhill J, Page AJ, Feasey NA, Kingsley RA, Thomson NR, Keane JA, Weill FX, Edwards DJ, Hawkey J, Harris SR, Mather AE, Cain AK, Hadfield J, Hart PJ, Thieu NT, Klemm EJ, Glinos DA, Breiman RF, Watson CH, Kariuki S, Gordon MA, Heyderman RS, Okoro C, Jacobs J, Lunguya O, Edmunds WJ, Msefula C, Chabalgoity JA, Kama M, Jenkins K, Dutta S, Marks F, Campos J, Thompson C, Obaro S, MacLennan CA, Dolecek C, Keddy KH, Smith AM, Parry CM, Karkey A, Mulholland EK, Campbell JI, Dongol S, Basnyat B, Dufour M, Bandaranayake D, Naseri TT, Singh SP, Hatta M, Newton P, Onsare RS, Isaia L, Dance D, Davong V, Thwaites G, Wijedoru L, Crump JA, De Pinna E, Nair S, Nilles EJ, Thanh DP, Turner P, Soeng S, Valcanis M, Powling J, Dimovski K, Hogg G, Farrar J, Holt KE, Dougan G. Wong VK, et al. Among authors: cain ak. Nat Genet. 2015 Jun;47(6):632-9. doi: 10.1038/ng.3281. Epub 2015 May 11. Nat Genet. 2015. PMID: 25961941 Free PMC article.
The TraDIS toolkit: sequencing and analysis for dense transposon mutant libraries.
Barquist L, Mayho M, Cummins C, Cain AK, Boinett CJ, Page AJ, Langridge GC, Quail MA, Keane JA, Parkhill J. Barquist L, et al. Among authors: cain ak. Bioinformatics. 2016 Apr 1;32(7):1109-11. doi: 10.1093/bioinformatics/btw022. Epub 2016 Jan 21. Bioinformatics. 2016. PMID: 26794317 Free PMC article.
74 results