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A library of human gut bacterial isolates paired with longitudinal multiomics data enables mechanistic microbiome research.
Poyet M, Groussin M, Gibbons SM, Avila-Pacheco J, Jiang X, Kearney SM, Perrotta AR, Berdy B, Zhao S, Lieberman TD, Swanson PK, Smith M, Roesemann S, Alexander JE, Rich SA, Livny J, Vlamakis H, Clish C, Bullock K, Deik A, Scott J, Pierce KA, Xavier RJ, Alm EJ. Poyet M, et al. Among authors: livny j. Nat Med. 2019 Sep;25(9):1442-1452. doi: 10.1038/s41591-019-0559-3. Epub 2019 Sep 2. Nat Med. 2019. PMID: 31477907
Perturbation-Specific Transcriptional Mapping for unbiased target elucidation of antibiotics.
Romano KP, Bagnall J, Warrier T, Sullivan J, Ferrara K, Orzechowski M, Nguyen P, Raines K, Livny J, Shoresh N, Hung D. Romano KP, et al. Among authors: livny j. bioRxiv [Preprint]. 2024 Jun 7:2024.04.25.590978. doi: 10.1101/2024.04.25.590978. bioRxiv. 2024. Update in: Proc Natl Acad Sci U S A. 2024 Nov 5;121(45):e2409747121. doi: 10.1073/pnas.2409747121 PMID: 38712067 Free PMC article. Updated. Preprint.
Simultaneous generation of many RNA-seq libraries in a single reaction.
Shishkin AA, Giannoukos G, Kucukural A, Ciulla D, Busby M, Surka C, Chen J, Bhattacharyya RP, Rudy RF, Patel MM, Novod N, Hung DT, Gnirke A, Garber M, Guttman M, Livny J. Shishkin AA, et al. Among authors: livny j. Nat Methods. 2015 Apr;12(4):323-5. doi: 10.1038/nmeth.3313. Epub 2015 Mar 2. Nat Methods. 2015. PMID: 25730492 Free PMC article.
Simultaneous detection of genotype and phenotype enables rapid and accurate antibiotic susceptibility determination.
Bhattacharyya RP, Bandyopadhyay N, Ma P, Son SS, Liu J, He LL, Wu L, Khafizov R, Boykin R, Cerqueira GC, Pironti A, Rudy RF, Patel MM, Yang R, Skerry J, Nazarian E, Musser KA, Taylor J, Pierce VM, Earl AM, Cosimi LA, Shoresh N, Beechem J, Livny J, Hung DT. Bhattacharyya RP, et al. Among authors: livny j. Nat Med. 2019 Dec;25(12):1858-1864. doi: 10.1038/s41591-019-0650-9. Epub 2019 Nov 25. Nat Med. 2019. PMID: 31768064 Free PMC article.
Rapid identification and phylogenetic classification of diverse bacterial pathogens in a multiplexed hybridization assay targeting ribosomal RNA.
Bhattacharyya RP, Walker M, Boykin R, Son SS, Liu J, Hachey AC, Ma P, Wu L, Choi K, Cummins KC, Benson M, Skerry J, Ryu H, Wong SY, Goldberg MB, Han J, Pierce VM, Cosimi LA, Shoresh N, Livny J, Beechem J, Hung DT. Bhattacharyya RP, et al. Among authors: livny j. Sci Rep. 2019 Mar 14;9(1):4516. doi: 10.1038/s41598-019-40792-3. Sci Rep. 2019. PMID: 30872641 Free PMC article.
70 results