Shu J - Search Results

1

Circulating microRNA trafficking and regulation: computational principles and practice.

Cui J, Shu J. Cui J, et al. Among authors: shu j. Brief Bioinform. 2020 Jul 15;21(4):1313-1326. doi: 10.1093/bib/bbz079. Brief Bioinform. 2020. PMID: 31504144 Free PMC article. Review.

2

Dietary MicroRNA Database (DMD): An Archive Database and Analytic Tool for Food-Borne microRNAs.

Chiang K, Shu J, Zempleni J, Cui J. Chiang K, et al. Among authors: shu j. PLoS One. 2015 Jun 1;10(6):e0128089. doi: 10.1371/journal.pone.0128089. eCollection 2015. PLoS One. 2015. PMID: 26030752 Free PMC article.

3

Computational Characterization of Exogenous MicroRNAs that Can Be Transferred into Human Circulation.

Shu J, Chiang K, Zempleni J, Cui J. Shu J, et al. PLoS One. 2015 Nov 3;10(11):e0140587. doi: 10.1371/journal.pone.0140587. eCollection 2015. PLoS One. 2015. Retraction in: PLoS One. 2022 May 9;17(5):e0268437. doi: 10.1371/journal.pone.0268437 PMID: 26528912 Free PMC article. Retracted.

4

Dynamic and Modularized MicroRNA Regulation and Its Implication in Human Cancers.

Shu J, Silva BVRE, Gao T, Xu Z, Cui J. Shu J, et al. Sci Rep. 2017 Oct 17;7(1):13356. doi: 10.1038/s41598-017-13470-5. Sci Rep. 2017. PMID: 29042600 Free PMC article.

5

A systematic approach to RNA-associated motif discovery.

Gao T, Shu J, Cui J. Gao T, et al. Among authors: shu j. BMC Genomics. 2018 Feb 14;19(1):146. doi: 10.1186/s12864-018-4528-x. BMC Genomics. 2018. PMID: 29444662 Free PMC article.

6

A diet defined by its content of bovine milk exosomes and their RNA cargos has moderate effects on gene expression, amino acid profiles and grip strength in skeletal muscle in C57BL/6 mice.

Leiferman A, Shu J, Grove R, Cui J, Adamec J, Zempleni J. Leiferman A, et al. Among authors: shu j. J Nutr Biochem. 2018 Sep;59:123-128. doi: 10.1016/j.jnutbio.2018.06.007. Epub 2018 Jun 12. J Nutr Biochem. 2018. PMID: 29986306 Free PMC article.

7

Genome-scale MicroRNA target prediction through clustering with Dirichlet process mixture model.

Hakguder Z, Shu J, Liao C, Pan K, Cui J. Hakguder Z, et al. Among authors: shu j. BMC Genomics. 2018 Sep 24;19(Suppl 7):658. doi: 10.1186/s12864-018-5029-7. BMC Genomics. 2018. PMID: 30255782 Free PMC article.

8

Astrocyte EV-Induced lincRNA-Cox2 Regulates Microglial Phagocytosis: Implications for Morphine-Mediated Neurodegeneration.

Hu G, Liao K, Niu F, Yang L, Dallon BW, Callen S, Tian C, Shu J, Cui J, Sun Z, Lyubchenko YL, Ka M, Chen XM, Buch S. Hu G, et al. Among authors: shu j. Mol Ther Nucleic Acids. 2018 Dec 7;13:450-463. doi: 10.1016/j.omtn.2018.09.019. Epub 2018 Sep 29. Mol Ther Nucleic Acids. 2018. PMID: 30388619 Free PMC article.

9

Human Absorbable MicroRNA Prediction based on an Ensemble Manifold Ranking Model.

Shu J, Chiang K, Zhao D, Cui J. Shu J, et al. Proceedings (IEEE Int Conf Bioinformatics Biomed). 2015 Nov;2015:295-300. doi: 10.1109/BIBM.2015.7359697. Epub 2015 Dec 17. Proceedings (IEEE Int Conf Bioinformatics Biomed). 2015. PMID: 30416843 Free PMC article.

10

Concentrations of Purine Metabolites Are Elevated in Fluids from Adults and Infants and in Livers from Mice Fed Diets Depleted of Bovine Milk Exosomes and their RNA Cargos.

Aguilar-Lozano A, Baier S, Grove R, Shu J, Giraud D, Leiferman A, Mercer KE, Cui J, Badger TM, Adamec J, Andres A, Zempleni J. Aguilar-Lozano A, et al. Among authors: shu j. J Nutr. 2018 Dec 1;148(12):1886-1894. doi: 10.1093/jn/nxy223. J Nutr. 2018. PMID: 30517726 Free PMC article.

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