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The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens.
Zhou N, Jiang Y, Bergquist TR, Lee AJ, Kacsoh BZ, Crocker AW, Lewis KA, Georghiou G, Nguyen HN, Hamid MN, Davis L, Dogan T, Atalay V, Rifaioglu AS, Dalkıran A, Cetin Atalay R, Zhang C, Hurto RL, Freddolino PL, Zhang Y, Bhat P, Supek F, Fernández JM, Gemovic B, Perovic VR, Davidović RS, Sumonja N, Veljkovic N, Asgari E, Mofrad MRK, Profiti G, Savojardo C, Martelli PL, Casadio R, Boecker F, Schoof H, Kahanda I, Thurlby N, McHardy AC, Renaux A, Saidi R, Gough J, Freitas AA, Antczak M, Fabris F, Wass MN, Hou J, Cheng J, Wang Z, Romero AE, Paccanaro A, Yang H, Goldberg T, Zhao C, Holm L, Törönen P, Medlar AJ, Zosa E, Borukhov I, Novikov I, Wilkins A, Lichtarge O, Chi PH, Tseng WC, Linial M, Rose PW, Dessimoz C, Vidulin V, Dzeroski S, Sillitoe I, Das S, Lees JG, Jones DT, Wan C, Cozzetto D, Fa R, Torres M, Warwick Vesztrocy A, Rodriguez JM, Tress ML, Frasca M, Notaro M, Grossi G, Petrini A, Re M, Valentini G, Mesiti M, Roche DB, Reeb J, Ritchie DW, Aridhi S, Alborzi SZ, Devignes MD, Koo DCE, Bonneau R, Gligorijević V, Barot M, Fang H, Toppo S, Lavezzo E, Falda M, Berselli M, Tosatto SCE, Carraro M, Piovesan D, Ur Rehman H, Mao Q, Zhang S, Vucetic S, Black GS, Jo D, Suh E, Dayton JB, Lar… See abstract for full author list ➔ Zhou N, et al. Among authors: johnson d. Genome Biol. 2019 Nov 19;20(1):244. doi: 10.1186/s13059-019-1835-8. Genome Biol. 2019. PMID: 31744546 Free PMC article.
Targeted Treatments for Fragile X Syndrome.
Johnson D, Clark C, Hagerman R. Johnson D, et al. Adv Neurobiol. 2023;30:225-253. doi: 10.1007/978-3-031-21054-9_10. Adv Neurobiol. 2023. PMID: 36928853
Organizational factors impacting the implementation of a digital mental health tool in Alberta's mental health care of youth and young adults.
Barker M, Hews-Girard J, Pinston K, Daniel S, Volcko L, Norman L, Bassi E, Bright K, Hickie I, Iorfino F, LaMonica H, Moskovic K, Fersovitch M, Bradley J, Stamp L, Gondziola J, Johnson D, Dimitropoulos G. Barker M, et al. Among authors: johnson d. Digit Health. 2025 Jan 9;11:20552076241310341. doi: 10.1177/20552076241310341. eCollection 2025 Jan-Dec. Digit Health. 2025. PMID: 39801578 Free PMC article.
[The mediational role of cognitive function on occupational outcomes in persons with major depressive and bipolar disorder].
Tamura JK, Harangi D, Rodrigues NB, Mansur RB, Subramaniapillai M, Johnson DE, Rosenblat JD, Lee Y, Di Vincenzo JD, Ho R, Sukhdeo R, Cao B, Lui L, Ceban F, McIntyre RS. Tamura JK, et al. Among authors: johnson de. CNS Spectr. 2025 Jan 10:1-8. doi: 10.1017/S1092852924002293. Online ahead of print. CNS Spectr. 2025. PMID: 39789718 French.
Tropical forest clearance impacts biodiversity and function, whereas logging changes structure.
Marsh CJ, Turner EC, Blonder BW, Bongalov B, Both S, Cruz RS, Elias DMO, Hemprich-Bennett D, Jotan P, Kemp V, Kritzler UH, Milne S, Milodowski DT, Mitchell SL, Pillco MM, Nunes MH, Riutta T, Robinson SJB, Slade EM, Bernard H, Burslem DFRP, Chung AYC, Clare EL, Coomes DA, Davies ZG, Edwards DP, Johnson D, Kratina P, Malhi Y, Majalap N, Nilus R, Ostle NJ, Rossiter SJ, Struebig MJ, Tobias JA, Williams M, Ewers RM, Lewis OT, Reynolds G, Teh YA, Hector A. Marsh CJ, et al. Among authors: johnson d. Science. 2025 Jan 10;387(6730):171-175. doi: 10.1126/science.adf9856. Epub 2025 Jan 9. Science. 2025. PMID: 39787239
Unraveling the elongating bovine conceptus microenvironment: identification of gene transcripts and proteins along the conceptus-maternal interface in cattle.
Peterson KD, Freeman TF, Poudel SP, Behura SK, Kakhniashvili D, Johnson DL, Prado TM, Strickland LG, Beever JE, Spencer TE, Mathew DJ. Peterson KD, et al. Among authors: johnson dl. Biol Reprod. 2025 Jan 7:ioaf002. doi: 10.1093/biolre/ioaf002. Online ahead of print. Biol Reprod. 2025. PMID: 39775669
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