Frenkel-Morgenstern M - Search Results

1

ChiTaRS 5.0: the comprehensive database of chimeric transcripts matched with druggable fusions and 3D chromatin maps.

Balamurali D, Gorohovski A, Detroja R, Palande V, Raviv-Shay D, Frenkel-Morgenstern M. Balamurali D, et al. Nucleic Acids Res. 2020 Jan 8;48(D1):D825-D834. doi: 10.1093/nar/gkz1025. Nucleic Acids Res. 2020. PMID: 31747015 Free PMC article.

2

Novel domain combinations in proteins encoded by chimeric transcripts.

Frenkel-Morgenstern M, Valencia A. Frenkel-Morgenstern M, et al. Bioinformatics. 2012 Jun 15;28(12):i67-74. doi: 10.1093/bioinformatics/bts216. Bioinformatics. 2012. PMID: 22689780 Free PMC article.

3

ChiTaRS: a database of human, mouse and fruit fly chimeric transcripts and RNA-sequencing data.

Frenkel-Morgenstern M, Gorohovski A, Lacroix V, Rogers M, Ibanez K, Boullosa C, Andres Leon E, Ben-Hur A, Valencia A. Frenkel-Morgenstern M, et al. Nucleic Acids Res. 2013 Jan;41(Database issue):D142-51. doi: 10.1093/nar/gks1041. Epub 2012 Nov 9. Nucleic Acids Res. 2013. PMID: 23143107 Free PMC article.

4

ChiTaRS 2.1--an improved database of the chimeric transcripts and RNA-seq data with novel sense-antisense chimeric RNA transcripts.

Frenkel-Morgenstern M, Gorohovski A, Vucenovic D, Maestre L, Valencia A. Frenkel-Morgenstern M, et al. Nucleic Acids Res. 2015 Jan;43(Database issue):D68-75. doi: 10.1093/nar/gku1199. Epub 2014 Nov 20. Nucleic Acids Res. 2015. PMID: 25414346 Free PMC article.

5

ChiTaRS-3.1-the enhanced chimeric transcripts and RNA-seq database matched with protein-protein interactions.

Gorohovski A, Tagore S, Palande V, Malka A, Raviv-Shay D, Frenkel-Morgenstern M. Gorohovski A, et al. Nucleic Acids Res. 2017 Jan 4;45(D1):D790-D795. doi: 10.1093/nar/gkw1127. Epub 2016 Nov 29. Nucleic Acids Res. 2017. PMID: 27899596 Free PMC article.

6

ChiPPI: a novel method for mapping chimeric protein-protein interactions uncovers selection principles of protein fusion events in cancer.

Frenkel-Morgenstern M, Gorohovski A, Tagore S, Sekar V, Vazquez M, Valencia A. Frenkel-Morgenstern M, et al. Nucleic Acids Res. 2017 Jul 7;45(12):7094-7105. doi: 10.1093/nar/gkx423. Nucleic Acids Res. 2017. PMID: 28549153 Free PMC article.

7

Altered Expression and Localization of Tumor Suppressive E3 Ubiquitin Ligase SMURF2 in Human Prostate and Breast Cancer.

Emanuelli A, Manikoth Ayyathan D, Koganti P, Shah PA, Apel-Sarid L, Paolini B, Detroja R, Frenkel-Morgenstern M, Blank M. Emanuelli A, et al. Cancers (Basel). 2019 Apr 18;11(4):556. doi: 10.3390/cancers11040556. Cancers (Basel). 2019. PMID: 31003445 Free PMC article.

8

The chromatin remodeler Chd1 regulates cohesin in budding yeast and humans.

Boginya A, Detroja R, Matityahu A, Frenkel-Morgenstern M, Onn I. Boginya A, et al. Sci Rep. 2019 Jun 20;9(1):8929. doi: 10.1038/s41598-019-45263-3. Sci Rep. 2019. PMID: 31222142 Free PMC article.

9

ProtFus: A Comprehensive Method Characterizing Protein-Protein Interactions of Fusion Proteins.

Tagore S, Gorohovski A, Jensen LJ, Frenkel-Morgenstern M. Tagore S, et al. PLoS Comput Biol. 2019 Aug 22;15(8):e1007239. doi: 10.1371/journal.pcbi.1007239. eCollection 2019 Aug. PLoS Comput Biol. 2019. PMID: 31437145 Free PMC article.

10

Identification of Chimeric RNAs Using RNA-Seq Reads and Protein-Protein Interactions of Translated Chimeras.

Frenkel-Morgenstern M. Frenkel-Morgenstern M. Methods Mol Biol. 2020;2079:27-40. doi: 10.1007/978-1-4939-9904-0_3. Methods Mol Biol. 2020. PMID: 31728960

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