Yugandhar K - Search Results

1

MaXLinker: Proteome-wide Cross-link Identifications with High Specificity and Sensitivity.

Yugandhar K, Wang TY, Leung AK, Lanz MC, Motorykin I, Liang J, Shayhidin EE, Smolka MB, Zhang S, Yu H. Yugandhar K, et al. Mol Cell Proteomics. 2020 Mar;19(3):554-568. doi: 10.1074/mcp.TIR119.001847. Epub 2019 Dec 15. Mol Cell Proteomics. 2020. PMID: 31839598 Free PMC article.

2

Inferring Protein-Protein Interaction Networks From Mass Spectrometry-Based Proteomic Approaches: A Mini-Review.

Yugandhar K, Gupta S, Yu H. Yugandhar K, et al. Comput Struct Biotechnol J. 2019 Jun 20;17:805-811. doi: 10.1016/j.csbj.2019.05.007. eCollection 2019. Comput Struct Biotechnol J. 2019. PMID: 31316724 Free PMC article. Review.

3

Structure-based validation can drastically underestimate error rate in proteome-wide cross-linking mass spectrometry studies.

Yugandhar K, Wang TY, Wierbowski SD, Shayhidin EE, Yu H. Yugandhar K, et al. Nat Methods. 2020 Oct;17(10):985-988. doi: 10.1038/s41592-020-0959-9. Epub 2020 Sep 29. Nat Methods. 2020. PMID: 32994567 Free PMC article.

4

[No title available]

[No authors listed] [No authors listed] PMID: 33451689

5

In-depth and 3-dimensional exploration of the budding yeast phosphoproteome.

Lanz MC, Yugandhar K, Gupta S, Sanford EJ, Faça VM, Vega S, Joiner AMN, Fromme JC, Yu H, Smolka MB. Lanz MC, et al. Among authors: yugandhar k. EMBO Rep. 2021 Feb 3;22(2):e51121. doi: 10.15252/embr.202051121. Epub 2021 Jan 25. EMBO Rep. 2021. PMID: 33491328 Free PMC article.

6

Structural basis of TRAPPIII-mediated Rab1 activation.

Joiner AM, Phillips BP, Yugandhar K, Sanford EJ, Smolka MB, Yu H, Miller EA, Fromme JC. Joiner AM, et al. Among authors: yugandhar k. EMBO J. 2021 Jun 15;40(12):e107607. doi: 10.15252/embj.2020107607. Epub 2021 May 21. EMBO J. 2021. PMID: 34018207 Free PMC article.

7

Handcuffing intrinsically disordered regions in Mlh1-Pms1 disrupts mismatch repair.

Furman CM, Wang TY, Zhao Q, Yugandhar K, Yu H, Alani E. Furman CM, et al. Among authors: yugandhar k. Nucleic Acids Res. 2021 Sep 20;49(16):9327-9341. doi: 10.1093/nar/gkab694. Nucleic Acids Res. 2021. PMID: 34390347 Free PMC article.

8

Progress in methodologies and quality-control strategies in protein cross-linking mass spectrometry.

Yugandhar K, Zhao Q, Gupta S, Xiong D, Yu H. Yugandhar K, et al. Proteomics. 2021 Dec;21(23-24):e2100145. doi: 10.1002/pmic.202100145. Epub 2021 Oct 28. Proteomics. 2021. PMID: 34647422 Review.

9

Protein-protein interactions: scoring schemes and binding affinity.

Gromiha MM, Yugandhar K, Jemimah S. Gromiha MM, et al. Among authors: yugandhar k. Curr Opin Struct Biol. 2017 Jun;44:31-38. doi: 10.1016/j.sbi.2016.10.016. Epub 2016 Nov 17. Curr Opin Struct Biol. 2017. PMID: 27866112 Review.

10

Deep learning-based method for predicting and classifying the binding affinity of protein-protein complexes.

Nikam R, Yugandhar K, Gromiha MM. Nikam R, et al. Among authors: yugandhar k. Biochim Biophys Acta Proteins Proteom. 2023 Nov 1;1871(6):140948. doi: 10.1016/j.bbapap.2023.140948. Epub 2023 Aug 9. Biochim Biophys Acta Proteins Proteom. 2023. PMID: 37567456

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