Cao Y - Search Results

1

scDC: single cell differential composition analysis.

Cao Y, Lin Y, Ormerod JT, Yang P, Yang JYH, Lo KK. Cao Y, et al. BMC Bioinformatics. 2019 Dec 24;20(Suppl 19):721. doi: 10.1186/s12859-019-3211-9. BMC Bioinformatics. 2019. PMID: 31870280 Free PMC article.

2

scClassify: sample size estimation and multiscale classification of cells using single and multiple reference.

Lin Y, Cao Y, Kim HJ, Salim A, Speed TP, Lin DM, Yang P, Yang JYH. Lin Y, et al. Among authors: cao y. Mol Syst Biol. 2020 Jun;16(6):e9389. doi: 10.15252/msb.20199389. Mol Syst Biol. 2020. PMID: 32567229 Free PMC article.

3

Integrative Analysis of Prognostic Biomarkers for Acute Rejection in Kidney Transplant Recipients.

Cao Y, Alexander SI, Chapman JR, Craig JC, Wong G, Yang JYH. Cao Y, et al. Transplantation. 2021 Jun 1;105(6):1225-1237. doi: 10.1097/TP.0000000000003516. Transplantation. 2021. PMID: 33148975

4

A benchmark study of simulation methods for single-cell RNA sequencing data.

Cao Y, Yang P, Yang JYH. Cao Y, et al. Nat Commun. 2021 Nov 25;12(1):6911. doi: 10.1038/s41467-021-27130-w. Nat Commun. 2021. PMID: 34824223 Free PMC article.

5

Benchmarking clustering algorithms on estimating the number of cell types from single-cell RNA-sequencing data.

Yu L, Cao Y, Yang JYH, Yang P. Yu L, et al. Among authors: cao y. Genome Biol. 2022 Feb 8;23(1):49. doi: 10.1186/s13059-022-02622-0. Genome Biol. 2022. PMID: 35135612 Free PMC article.

6

scFeatures: multi-view representations of single-cell and spatial data for disease outcome prediction.

Cao Y, Lin Y, Patrick E, Yang P, Yang JYH. Cao Y, et al. Bioinformatics. 2022 Oct 14;38(20):4745-4753. doi: 10.1093/bioinformatics/btac590. Bioinformatics. 2022. PMID: 36040148 Free PMC article.

7

Benchmarking of analytical combinations for COVID-19 outcome prediction using single-cell RNA sequencing data.

Cao Y, Ghazanfar S, Yang P, Yang J. Cao Y, et al. Brief Bioinform. 2023 May 19;24(3):bbad159. doi: 10.1093/bib/bbad159. Brief Bioinform. 2023. PMID: 37096588 Free PMC article.

8

Atlas-scale single-cell multi-sample multi-condition data integration using scMerge2.

Lin Y, Cao Y, Willie E, Patrick E, Yang JYH. Lin Y, et al. Among authors: cao y. Nat Commun. 2023 Jul 17;14(1):4272. doi: 10.1038/s41467-023-39923-2. Nat Commun. 2023. PMID: 37460600 Free PMC article.

9

Pcdh19 mediates olfactory sensory neuron coalescence during postnatal stages and regeneration.

Martinez AP, Chung AC, Huang S, Bisogni AJ, Lin Y, Cao Y, Williams EO, Kim JY, Yang JYH, Lin DM. Martinez AP, et al. Among authors: cao y. iScience. 2023 Oct 16;26(11):108220. doi: 10.1016/j.isci.2023.108220. eCollection 2023 Nov 17. iScience. 2023. PMID: 37965156 Free PMC article.

10

Thinking process templates for constructing data stories with SCDNEY.

Cao Y, Tran A, Kim H, Robertson N, Lin Y, Torkel M, Yang P, Patrick E, Ghazanfar S, Yang J. Cao Y, et al. F1000Res. 2023 Dec 15;12:261. doi: 10.12688/f1000research.130623.1. eCollection 2023. F1000Res. 2023. PMID: 38434622 Free PMC article.

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