Kim T - Search Results

1

scReClassify: post hoc cell type classification of single-cell rNA-seq data.

Kim T, Lo K, Geddes TA, Kim HJ, Yang JYH, Yang P. Kim T, et al. Among authors: kim hj. BMC Genomics. 2019 Dec 24;20(Suppl 9):913. doi: 10.1186/s12864-019-6305-x. BMC Genomics. 2019. PMID: 31874628 Free PMC article.

2

Integrative analysis identifies co-dependent gene expression regulation of BRG1 and CHD7 at distal regulatory sites in embryonic stem cells.

Yang P, Oldfield A, Kim T, Yang A, Yang JYH, Ho JWK. Yang P, et al. Among authors: kim t. Bioinformatics. 2017 Jul 1;33(13):1916-1920. doi: 10.1093/bioinformatics/btx092. Bioinformatics. 2017. PMID: 28203701 Free PMC article.

3

Impact of similarity metrics on single-cell RNA-seq data clustering.

Kim T, Chen IR, Lin Y, Wang AY, Yang JYH, Yang P. Kim T, et al. Brief Bioinform. 2019 Nov 27;20(6):2316-2326. doi: 10.1093/bib/bby076. Brief Bioinform. 2019. PMID: 30137247

4

QCMAP: An Interactive Web-Tool for Performance Diagnosis and Prediction of LC-MS Systems.

Kim T, Chen IR, Parker BL, Humphrey SJ, Crossett B, Cordwell SJ, Yang P, Yang JYH. Kim T, et al. Proteomics. 2019 Jul;19(13):e1900068. doi: 10.1002/pmic.201900068. Epub 2019 Jun 13. Proteomics. 2019. PMID: 31099962

5

Autoencoder-based cluster ensembles for single-cell RNA-seq data analysis.

Geddes TA, Kim T, Nan L, Burchfield JG, Yang JYH, Tao D, Yang P. Geddes TA, et al. Among authors: kim t. BMC Bioinformatics. 2019 Dec 24;20(Suppl 19):660. doi: 10.1186/s12859-019-3179-5. BMC Bioinformatics. 2019. PMID: 31870278 Free PMC article.

6

PhosR enables processing and functional analysis of phosphoproteomic data.

Kim HJ, Kim T, Hoffman NJ, Xiao D, James DE, Humphrey SJ, Yang P. Kim HJ, et al. Among authors: kim t. Cell Rep. 2021 Feb 23;34(8):108771. doi: 10.1016/j.celrep.2021.108771. Cell Rep. 2021. PMID: 33626354 Free article.

7

Treatment usage patterns of oral appliances for obstructive sleep apnea over the first 60 days: a cluster analysis.

Sutherland K, Almeida FR, Kim T, Brown EC, Knapman F, Ngiam J, Yang J, Bilston LE, Cistulli PA. Sutherland K, et al. Among authors: kim t. J Clin Sleep Med. 2021 Sep 1;17(9):1785-1792. doi: 10.5664/jcsm.9288. J Clin Sleep Med. 2021. PMID: 33847557 Free PMC article.

Understanding initial treatment usage patterns provide an opportunity for early intervention to improve long-term usage and outcomes. CITATION: Sutherland K, Almeida FR, Kim T, et al. Treatment usage patterns of oral appliances for obstructive sleep apnea over the f …

Understanding initial treatment usage patterns provide an opportunity for early intervention to improve long-term usage and outcomes. CITATI …

8

Metabolic Signatures in Coronary Artery Disease: Results from the BioHEART-CT Study.

Vernon ST, Tang O, Kim T, Chan AS, Kott KA, Park J, Hansen T, Koay YC, Grieve SM, O'Sullivan JF, Yang JY, Figtree GA. Vernon ST, et al. Among authors: kim t. Cells. 2021 Apr 22;10(5):980. doi: 10.3390/cells10050980. Cells. 2021. PMID: 33922315 Free PMC article.

9

Protocol for the processing and downstream analysis of phosphoproteomic data with PhosR.

Kim HJ, Kim T, Xiao D, Yang P. Kim HJ, et al. Among authors: kim t. STAR Protoc. 2021 Jun 5;2(2):100585. doi: 10.1016/j.xpro.2021.100585. eCollection 2021 Jun 18. STAR Protoc. 2021. PMID: 34151303 Free PMC article.

10

A hierarchical approach to removal of unwanted variation for large-scale metabolomics data.

Kim T, Tang O, Vernon ST, Kott KA, Koay YC, Park J, James DE, Grieve SM, Speed TP, Yang P, Figtree GA, O'Sullivan JF, Yang JYH. Kim T, et al. Nat Commun. 2021 Aug 17;12(1):4992. doi: 10.1038/s41467-021-25210-5. Nat Commun. 2021. PMID: 34404777 Free PMC article.

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