Jones DT - Search Results

1

Improved protein structure prediction using potentials from deep learning.

Senior AW, Evans R, Jumper J, Kirkpatrick J, Sifre L, Green T, Qin C, Žídek A, Nelson AWR, Bridgland A, Penedones H, Petersen S, Simonyan K, Crossan S, Kohli P, Jones DT, Silver D, Kavukcuoglu K, Hassabis D. Senior AW, et al. Among authors: jones dt. Nature. 2020 Jan;577(7792):706-710. doi: 10.1038/s41586-019-1923-7. Epub 2020 Jan 15. Nature. 2020. PMID: 31942072

2

pGenTHREADER and pDomTHREADER: new methods for improved protein fold recognition and superfamily discrimination.

Lobley A, Sadowski MI, Jones DT. Lobley A, et al. Among authors: jones dt. Bioinformatics. 2009 Jul 15;25(14):1761-7. doi: 10.1093/bioinformatics/btp302. Epub 2009 May 7. Bioinformatics. 2009. PMID: 19429599

3

Improved protein contact predictions with the MetaPSICOV2 server in CASP12.

Buchan DWA, Jones DT. Buchan DWA, et al. Among authors: jones dt. Proteins. 2018 Mar;86 Suppl 1(Suppl Suppl 1):78-83. doi: 10.1002/prot.25379. Epub 2017 Sep 29. Proteins. 2018. PMID: 28901583 Free PMC article.

4

High precision in protein contact prediction using fully convolutional neural networks and minimal sequence features.

Jones DT, Kandathil SM. Jones DT, et al. Bioinformatics. 2018 Oct 1;34(19):3308-3315. doi: 10.1093/bioinformatics/bty341. Bioinformatics. 2018. PMID: 29718112 Free PMC article.

5

Predicting human protein function with multi-task deep neural networks.

Fa R, Cozzetto D, Wan C, Jones DT. Fa R, et al. Among authors: jones dt. PLoS One. 2018 Jun 11;13(6):e0198216. doi: 10.1371/journal.pone.0198216. eCollection 2018. PLoS One. 2018. PMID: 29889900 Free PMC article.

6

Prediction of interresidue contacts with DeepMetaPSICOV in CASP13.

Kandathil SM, Greener JG, Jones DT. Kandathil SM, et al. Among authors: jones dt. Proteins. 2019 Dec;87(12):1092-1099. doi: 10.1002/prot.25779. Epub 2019 Jul 27. Proteins. 2019. PMID: 31298436 Free PMC article.

7

Using deep maxout neural networks to improve the accuracy of function prediction from protein interaction networks.

Wan C, Cozzetto D, Fa R, Jones DT. Wan C, et al. Among authors: jones dt. PLoS One. 2019 Jul 23;14(7):e0209958. doi: 10.1371/journal.pone.0209958. eCollection 2019. PLoS One. 2019. PMID: 31335894 Free PMC article.

8

Deep learning extends de novo protein modelling coverage of genomes using iteratively predicted structural constraints.

Greener JG, Kandathil SM, Jones DT. Greener JG, et al. Among authors: jones dt. Nat Commun. 2019 Sep 4;10(1):3977. doi: 10.1038/s41467-019-11994-0. Nat Commun. 2019. PMID: 31484923 Free PMC article.

9

Setting the standards for machine learning in biology.

Jones DT. Jones DT. Nat Rev Mol Cell Biol. 2019 Nov;20(11):659-660. doi: 10.1038/s41580-019-0176-5. Nat Rev Mol Cell Biol. 2019. PMID: 31548714 Review. No abstract available.

10

Recent developments in deep learning applied to protein structure prediction.

Kandathil SM, Greener JG, Jones DT. Kandathil SM, et al. Among authors: jones dt. Proteins. 2019 Dec;87(12):1179-1189. doi: 10.1002/prot.25824. Epub 2019 Oct 14. Proteins. 2019. PMID: 31589782 Free PMC article.

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