He J - Search Results

1

Challenges and opportunities of automated protein-protein docking: HDOCK server vs human predictions in CAPRI Rounds 38-46.

Yan Y, He J, Feng Y, Lin P, Tao H, Huang SY. Yan Y, et al. Among authors: he j. Proteins. 2020 Aug;88(8):1055-1069. doi: 10.1002/prot.25874. Epub 2020 Feb 7. Proteins. 2020. PMID: 31994779

2

PepBDB: a comprehensive structural database of biological peptide-protein interactions.

Wen Z, He J, Tao H, Huang SY. Wen Z, et al. Among authors: he j. Bioinformatics. 2019 Jan 1;35(1):175-177. doi: 10.1093/bioinformatics/bty579. Bioinformatics. 2019. PMID: 29982280

3

Protein-ensemble-RNA docking by efficient consideration of protein flexibility through homology models.

He J, Tao H, Huang SY. He J, et al. Bioinformatics. 2019 Dec 1;35(23):4994-5002. doi: 10.1093/bioinformatics/btz388. Bioinformatics. 2019. PMID: 31086984

4

HNADOCK: a nucleic acid docking server for modeling RNA/DNA-RNA/DNA 3D complex structures.

He J, Wang J, Tao H, Xiao Y, Huang SY. He J, et al. Nucleic Acids Res. 2019 Jul 2;47(W1):W35-W42. doi: 10.1093/nar/gkz412. Nucleic Acids Res. 2019. PMID: 31114906 Free PMC article.

5

Topology-independent and global protein structure alignment through an FFT-based algorithm.

Wen Z, He J, Huang SY. Wen Z, et al. Among authors: he j. Bioinformatics. 2020 Jan 15;36(2):478-486. doi: 10.1093/bioinformatics/btz609. Bioinformatics. 2020. PMID: 31384919

6

The HDOCK server for integrated protein-protein docking.

Yan Y, Tao H, He J, Huang SY. Yan Y, et al. Among authors: he j. Nat Protoc. 2020 May;15(5):1829-1852. doi: 10.1038/s41596-020-0312-x. Epub 2020 Apr 8. Nat Protoc. 2020. PMID: 32269383

7

Molecular Mechanism of Evolution and Human Infection with SARS-CoV-2.

He J, Tao H, Yan Y, Huang SY, Xiao Y. He J, et al. Viruses. 2020 Apr 10;12(4):428. doi: 10.3390/v12040428. Viruses. 2020. PMID: 32290077 Free PMC article.

8

EMNUSS: a deep learning framework for secondary structure annotation in cryo-EM maps.

He J, Huang SY. He J, et al. Brief Bioinform. 2021 Nov 5;22(6):bbab156. doi: 10.1093/bib/bbab156. Brief Bioinform. 2021. PMID: 33954706 Free PMC article.

9

Full-length de novo protein structure determination from cryo-EM maps using deep learning.

He J, Huang SY. He J, et al. Bioinformatics. 2021 Oct 25;37(20):3480-3490. doi: 10.1093/bioinformatics/btab357. Bioinformatics. 2021. PMID: 33978686

10

Docking and scoring for nucleic acid-ligand interactions: Principles and current status.

Feng Y, Yan Y, He J, Tao H, Wu Q, Huang SY. Feng Y, et al. Among authors: he j. Drug Discov Today. 2022 Mar;27(3):838-847. doi: 10.1016/j.drudis.2021.10.013. Epub 2021 Oct 27. Drug Discov Today. 2022. PMID: 34718205 Review.

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