Varadi M - Search Results

1

Interaction between the scaffold proteins CBP by IQGAP1 provides an interface between gene expression and cytoskeletal activity.

Kosol S, Contreras-Martos S, Piai A, Varadi M, Lazar T, Bekesi A, Lebrun P, Felli IC, Pierattelli R, Tompa P. Kosol S, et al. Among authors: varadi m. Sci Rep. 2020 Apr 1;10(1):5753. doi: 10.1038/s41598-020-62069-w. Sci Rep. 2020. PMID: 32238831 Free PMC article.

2

The opportunities and challenges posed by the new generation of deep learning-based protein structure predictors.

Varadi M, Bordin N, Orengo C, Velankar S. Varadi M, et al. Curr Opin Struct Biol. 2023 Apr;79:102543. doi: 10.1016/j.sbi.2023.102543. Epub 2023 Feb 18. Curr Opin Struct Biol. 2023. PMID: 36807079 Free article. Review.

3

pE-DB: a database of structural ensembles of intrinsically disordered and of unfolded proteins.

Varadi M, Kosol S, Lebrun P, Valentini E, Blackledge M, Dunker AK, Felli IC, Forman-Kay JD, Kriwacki RW, Pierattelli R, Sussman J, Svergun DI, Uversky VN, Vendruscolo M, Wishart D, Wright PE, Tompa P. Varadi M, et al. Nucleic Acids Res. 2014 Jan;42(Database issue):D326-35. doi: 10.1093/nar/gkt960. Epub 2013 Oct 29. Nucleic Acids Res. 2014. PMID: 24174539 Free PMC article.

4

Predicting the predictive power of IDP ensembles.

Tompa P, Varadi M. Tompa P, et al. Among authors: varadi m. Structure. 2014 Feb 4;22(2):177-8. doi: 10.1016/j.str.2014.01.003. Structure. 2014. PMID: 24507778 Free article.

5

DisCons: a novel tool to quantify and classify evolutionary conservation of intrinsic protein disorder.

Varadi M, Guharoy M, Zsolyomi F, Tompa P. Varadi M, et al. BMC Bioinformatics. 2015 May 13;16(1):153. doi: 10.1186/s12859-015-0592-2. BMC Bioinformatics. 2015. PMID: 25968230 Free PMC article.

6

Computational approaches for inferring the functions of intrinsically disordered proteins.

Varadi M, Vranken W, Guharoy M, Tompa P. Varadi M, et al. Front Mol Biosci. 2015 Aug 5;2:45. doi: 10.3389/fmolb.2015.00045. eCollection 2015. Front Mol Biosci. 2015. PMID: 26301226 Free PMC article. Review.

7

The Protein Ensemble Database.

Varadi M, Tompa P. Varadi M, et al. Adv Exp Med Biol. 2015;870:335-49. doi: 10.1007/978-3-319-20164-1_11. Adv Exp Med Biol. 2015. PMID: 26387108 Review.

8

Functional Advantages of Conserved Intrinsic Disorder in RNA-Binding Proteins.

Varadi M, Zsolyomi F, Guharoy M, Tompa P. Varadi M, et al. PLoS One. 2015 Oct 6;10(10):e0139731. doi: 10.1371/journal.pone.0139731. eCollection 2015. PLoS One. 2015. PMID: 26439842 Free PMC article.

9

Start2Fold: a database of hydrogen/deuterium exchange data on protein folding and stability.

Pancsa R, Varadi M, Tompa P, Vranken WF. Pancsa R, et al. Among authors: varadi m. Nucleic Acids Res. 2016 Jan 4;44(D1):D429-34. doi: 10.1093/nar/gkv1185. Epub 2015 Nov 17. Nucleic Acids Res. 2016. PMID: 26582925 Free PMC article.

10

Just a Flexible Linker? The Structural and Dynamic Properties of CBP-ID4 Revealed by NMR Spectroscopy.

Piai A, Calçada EO, Tarenzi T, Grande AD, Varadi M, Tompa P, Felli IC, Pierattelli R. Piai A, et al. Among authors: varadi m. Biophys J. 2016 Jan 19;110(2):372-381. doi: 10.1016/j.bpj.2015.11.3516. Biophys J. 2016. PMID: 26789760 Free PMC article.

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