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Page 1
Transcriptional profiling and therapeutic targeting of oxidative stress in neuroinflammation.
Mendiola AS, Ryu JK, Bardehle S, Meyer-Franke A, Ang KK, Wilson C, Baeten KM, Hanspers K, Merlini M, Thomas S, Petersen MA, Williams A, Thomas R, Rafalski VA, Meza-Acevedo R, Tognatta R, Yan Z, Pfaff SJ, Machado MR, Bedard C, Rios Coronado PE, Jiang X, Wang J, Pleiss MA, Green AJ, Zamvil SS, Pico AR, Bruneau BG, Arkin MR, Akassoglou K. Mendiola AS, et al. Among authors: hanspers k. Nat Immunol. 2020 May;21(5):513-524. doi: 10.1038/s41590-020-0654-0. Epub 2020 Apr 13. Nat Immunol. 2020. PMID: 32284594 Free PMC article.
GenMAPP 2: new features and resources for pathway analysis.
Salomonis N, Hanspers K, Zambon AC, Vranizan K, Lawlor SC, Dahlquist KD, Doniger SW, Stuart J, Conklin BR, Pico AR. Salomonis N, et al. Among authors: hanspers k. BMC Bioinformatics. 2007 Jun 24;8:217. doi: 10.1186/1471-2105-8-217. BMC Bioinformatics. 2007. PMID: 17588266 Free PMC article.
WikiPathways: pathway editing for the people.
Pico AR, Kelder T, van Iersel MP, Hanspers K, Conklin BR, Evelo C. Pico AR, et al. Among authors: hanspers k. PLoS Biol. 2008 Jul 22;6(7):e184. doi: 10.1371/journal.pbio.0060184. PLoS Biol. 2008. PMID: 18651794 Free PMC article.
GO-Elite: a flexible solution for pathway and ontology over-representation.
Zambon AC, Gaj S, Ho I, Hanspers K, Vranizan K, Evelo CT, Conklin BR, Pico AR, Salomonis N. Zambon AC, et al. Among authors: hanspers k. Bioinformatics. 2012 Aug 15;28(16):2209-10. doi: 10.1093/bioinformatics/bts366. Epub 2012 Jun 27. Bioinformatics. 2012. PMID: 22743224 Free PMC article.
NOA: a cytoscape plugin for network ontology analysis.
Zhang C, Wang J, Hanspers K, Xu D, Chen L, Pico AR. Zhang C, et al. Among authors: hanspers k. Bioinformatics. 2013 Aug 15;29(16):2066-7. doi: 10.1093/bioinformatics/btt334. Epub 2013 Jun 7. Bioinformatics. 2013. PMID: 23749961 Free PMC article.
WikiPathways: capturing the full diversity of pathway knowledge.
Kutmon M, Riutta A, Nunes N, Hanspers K, Willighagen EL, Bohler A, Mélius J, Waagmeester A, Sinha SR, Miller R, Coort SL, Cirillo E, Smeets B, Evelo CT, Pico AR. Kutmon M, et al. Among authors: hanspers k. Nucleic Acids Res. 2016 Jan 4;44(D1):D488-94. doi: 10.1093/nar/gkv1024. Epub 2015 Oct 19. Nucleic Acids Res. 2016. PMID: 26481357 Free PMC article.
Reactome from a WikiPathways Perspective.
Bohler A, Wu G, Kutmon M, Pradhana LA, Coort SL, Hanspers K, Haw R, Pico AR, Evelo CT. Bohler A, et al. Among authors: hanspers k. PLoS Comput Biol. 2016 May 20;12(5):e1004941. doi: 10.1371/journal.pcbi.1004941. eCollection 2016 May. PLoS Comput Biol. 2016. PMID: 27203685 Free PMC article.
Fibrin-targeting immunotherapy protects against neuroinflammation and neurodegeneration.
Ryu JK, Rafalski VA, Meyer-Franke A, Adams RA, Poda SB, Rios Coronado PE, Pedersen LØ, Menon V, Baeten KM, Sikorski SL, Bedard C, Hanspers K, Bardehle S, Mendiola AS, Davalos D, Machado MR, Chan JP, Plastira I, Petersen MA, Pfaff SJ, Ang KK, Hallenbeck KK, Syme C, Hakozaki H, Ellisman MH, Swanson RA, Zamvil SS, Arkin MR, Zorn SH, Pico AR, Mucke L, Freedman SB, Stavenhagen JB, Nelson RB, Akassoglou K. Ryu JK, et al. Among authors: hanspers k. Nat Immunol. 2018 Nov;19(11):1212-1223. doi: 10.1038/s41590-018-0232-x. Epub 2018 Oct 15. Nat Immunol. 2018. PMID: 30323343 Free PMC article.
40 results