Xu C - Search Results

1

Inference of single-cell phylogenies from lineage tracing data using Cassiopeia.

Jones MG, Khodaverdian A, Quinn JJ, Chan MM, Hussmann JA, Wang R, Xu C, Weissman JS, Yosef N. Jones MG, et al. Among authors: xu c. Genome Biol. 2020 Apr 14;21(1):92. doi: 10.1186/s13059-020-02000-8. Genome Biol. 2020. PMID: 32290857 Free PMC article.

2

Simulating multiple faceted variability in single cell RNA sequencing.

Zhang X, Xu C, Yosef N. Zhang X, et al. Among authors: xu c. Nat Commun. 2019 Jun 13;10(1):2611. doi: 10.1038/s41467-019-10500-w. Nat Commun. 2019. PMID: 31197158 Free PMC article.

3

Integrated single cell analysis of blood and cerebrospinal fluid leukocytes in multiple sclerosis.

Schafflick D, Xu CA, Hartlehnert M, Cole M, Schulte-Mecklenbeck A, Lautwein T, Wolbert J, Heming M, Meuth SG, Kuhlmann T, Gross CC, Wiendl H, Yosef N, Meyer Zu Horste G. Schafflick D, et al. Among authors: xu ca. Nat Commun. 2020 Jan 14;11(1):247. doi: 10.1038/s41467-019-14118-w. Nat Commun. 2020. PMID: 31937773 Free PMC article.

4

Probabilistic harmonization and annotation of single-cell transcriptomics data with deep generative models.

Xu C, Lopez R, Mehlman E, Regier J, Jordan MI, Yosef N. Xu C, et al. Mol Syst Biol. 2021 Jan;17(1):e9620. doi: 10.15252/msb.20209620. Mol Syst Biol. 2021. PMID: 33491336 Free PMC article.

5

RNA splicing programs define tissue compartments and cell types at single-cell resolution.

Olivieri JE, Dehghannasiri R, Wang PL, Jang S, de Morree A, Tan SY, Ming J, Ruohao Wu A; Tabula Sapiens Consortium; Quake SR, Krasnow MA, Salzman J. Olivieri JE, et al. Elife. 2021 Sep 13;10:e70692. doi: 10.7554/eLife.70692. Elife. 2021. PMID: 34515025 Free PMC article.

6

Mucosal Vaccination with Cyclic Dinucleotide Adjuvants Induces Effective T Cell Homing and IL-17-Dependent Protection against Mycobacterium tuberculosis Infection.

Jong RM, Van Dis E, Berry SB, Nguyenla X, Baltodano A, Pastenkos G, Xu C, Fox D, Yosef N, McWhirter SM, Stanley SA. Jong RM, et al. Among authors: xu c. J Immunol. 2022 Jan 15;208(2):407-419. doi: 10.4049/jimmunol.2100029. Epub 2021 Dec 29. J Immunol. 2022. PMID: 34965963 Free PMC article.

7

A Python library for probabilistic analysis of single-cell omics data.

Gayoso A, Lopez R, Xing G, Boyeau P, Valiollah Pour Amiri V, Hong J, Wu K, Jayasuriya M, Mehlman E, Langevin M, Liu Y, Samaran J, Misrachi G, Nazaret A, Clivio O, Xu C, Ashuach T, Gabitto M, Lotfollahi M, Svensson V, da Veiga Beltrame E, Kleshchevnikov V, Talavera-López C, Pachter L, Theis FJ, Streets A, Jordan MI, Regier J, Yosef N. Gayoso A, et al. Among authors: xu c. Nat Biotechnol. 2022 Feb;40(2):163-166. doi: 10.1038/s41587-021-01206-w. Nat Biotechnol. 2022. PMID: 35132262 No abstract available.

8

Cell types of origin of the cell-free transcriptome.

Vorperian SK, Moufarrej MN; Tabula Sapiens Consortium; Quake SR. Vorperian SK, et al. Nat Biotechnol. 2022 Jun;40(6):855-861. doi: 10.1038/s41587-021-01188-9. Epub 2022 Feb 7. Nat Biotechnol. 2022. PMID: 35132263 Free PMC article.

9

Publisher Correction: Cell types of origin of the cell-free transcriptome.

Vorperian SK, Moufarrej MN; Tabula Sapiens Consortium; Quake SR. Vorperian SK, et al. Nat Biotechnol. 2022 Jun;40(6):974. doi: 10.1038/s41587-022-01293-3. Nat Biotechnol. 2022. PMID: 35347330 Free PMC article. No abstract available.

10

Consensus prediction of cell type labels in single-cell data with popV.

Ergen C, Xing G, Xu C, Kim M, Jayasuriya M, McGeever E, Oliveira Pisco A, Streets A, Yosef N. Ergen C, et al. Among authors: xu c. Nat Genet. 2024 Dec;56(12):2731-2738. doi: 10.1038/s41588-024-01993-3. Epub 2024 Nov 20. Nat Genet. 2024. PMID: 39567746 Free PMC article.

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