Dehzangi A - Search Results

1

Predicting protein-peptide binding sites with a deep convolutional neural network.

Wardah W, Dehzangi A, Taherzadeh G, Rashid MA, Khan MGM, Tsunoda T, Sharma A. Wardah W, et al. Among authors: dehzangi a. J Theor Biol. 2020 Jul 7;496:110278. doi: 10.1016/j.jtbi.2020.110278. Epub 2020 Apr 13. J Theor Biol. 2020. PMID: 32298689

2

Protein fold recognition using HMM-HMM alignment and dynamic programming.

Lyons J, Paliwal KK, Dehzangi A, Heffernan R, Tsunoda T, Sharma A. Lyons J, et al. Among authors: dehzangi a. J Theor Biol. 2016 Mar 21;393:67-74. doi: 10.1016/j.jtbi.2015.12.018. Epub 2016 Jan 19. J Theor Biol. 2016. PMID: 26801876

3

PSSM-Suc: Accurately predicting succinylation using position specific scoring matrix into bigram for feature extraction.

Dehzangi A, López Y, Lal SP, Taherzadeh G, Michaelson J, Sattar A, Tsunoda T, Sharma A. Dehzangi A, et al. J Theor Biol. 2017 Jul 21;425:97-102. doi: 10.1016/j.jtbi.2017.05.005. Epub 2017 May 5. J Theor Biol. 2017. PMID: 28483566

4

SumSec: Accurate Prediction of Sumoylation Sites Using Predicted Secondary Structure.

Dehzangi A, López Y, Taherzadeh G, Sharma A, Tsunoda T. Dehzangi A, et al. Molecules. 2018 Dec 10;23(12):3260. doi: 10.3390/molecules23123260. Molecules. 2018. PMID: 30544729 Free PMC article.

5

A feature extraction technique using bi-gram probabilities of position specific scoring matrix for protein fold recognition.

Sharma A, Lyons J, Dehzangi A, Paliwal KK. Sharma A, et al. Among authors: dehzangi a. J Theor Biol. 2013 Mar 7;320:41-6. doi: 10.1016/j.jtbi.2012.12.008. Epub 2012 Dec 13. J Theor Biol. 2013. PMID: 23246717 Free article.

6

Protein fold recognition by alignment of amino acid residues using kernelized dynamic time warping.

Lyons J, Biswas N, Sharma A, Dehzangi A, Paliwal KK. Lyons J, et al. Among authors: dehzangi a. J Theor Biol. 2014 Aug 7;354:137-45. doi: 10.1016/j.jtbi.2014.03.033. Epub 2014 Mar 31. J Theor Biol. 2014. PMID: 24698944

7

Predicting backbone Cα angles and dihedrals from protein sequences by stacked sparse auto-encoder deep neural network.

Lyons J, Dehzangi A, Heffernan R, Sharma A, Paliwal K, Sattar A, Zhou Y, Yang Y. Lyons J, et al. Among authors: dehzangi a. J Comput Chem. 2014 Oct 30;35(28):2040-6. doi: 10.1002/jcc.23718. Epub 2014 Sep 12. J Comput Chem. 2014. PMID: 25212657

8

Gram-positive and Gram-negative protein subcellular localization by incorporating evolutionary-based descriptors into Chou׳s general PseAAC.

Dehzangi A, Heffernan R, Sharma A, Lyons J, Paliwal K, Sattar A. Dehzangi A, et al. J Theor Biol. 2015 Jan 7;364:284-94. doi: 10.1016/j.jtbi.2014.09.029. Epub 2014 Sep 28. J Theor Biol. 2015. PMID: 25264267 Free article.

9

Probabilistic expression of spatially varied amino acid dimers into general form of Chou׳s pseudo amino acid composition for protein fold recognition.

Saini H, Raicar G, Sharma A, Lal S, Dehzangi A, Lyons J, Paliwal KK, Imoto S, Miyano S. Saini H, et al. Among authors: dehzangi a. J Theor Biol. 2015 Sep 7;380:291-8. doi: 10.1016/j.jtbi.2015.05.030. Epub 2015 Jun 12. J Theor Biol. 2015. PMID: 26079221

10

Subcellular localization for Gram positive and Gram negative bacterial proteins using linear interpolation smoothing model.

Saini H, Raicar G, Dehzangi A, Lal S, Sharma A. Saini H, et al. Among authors: dehzangi a. J Theor Biol. 2015 Dec 7;386:25-33. doi: 10.1016/j.jtbi.2015.08.020. Epub 2015 Sep 18. J Theor Biol. 2015. PMID: 26386142

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