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A Suite of Tutorials for the WESTPA Rare-Events Sampling Software [Article v1.0].
Bogetti AT, Mostofian B, Dickson A, Pratt AJ, Saglam AS, Harrison PO, Adelman JL, Dudek M, Torrillo PA, DeGrave AJ, Adhikari U, Zwier MC, Zuckerman DM, Chong LT. Bogetti AT, et al. Among authors: dickson a. Living J Comput Mol Sci. 2019;1(2):10607. doi: 10.33011/livecoms.1.2.10607. Epub 2019 Oct 4. Living J Comput Mol Sci. 2019. PMID: 32395705 Free PMC article.
Predicting the structural basis of targeted protein degradation by integrating molecular dynamics simulations with structural mass spectrometry.
Dixon T, MacPherson D, Mostofian B, Dauzhenka T, Lotz S, McGee D, Shechter S, Shrestha UR, Wiewiora R, McDargh ZA, Pei F, Pal R, Ribeiro JV, Wilkerson T, Sachdeva V, Gao N, Jain S, Sparks S, Li Y, Vinitsky A, Zhang X, Razavi AM, Kolossváry I, Imbriglio J, Evdokimov A, Bergeron L, Zhou W, Adhikari J, Ruprecht B, Dickson A, Xu H, Sherman W, Izaguirre JA. Dixon T, et al. Among authors: dickson a. Nat Commun. 2022 Oct 6;13(1):5884. doi: 10.1038/s41467-022-33575-4. Nat Commun. 2022. PMID: 36202813 Free PMC article.
REVO: Resampling of ensembles by variation optimization.
Donyapour N, Roussey NM, Dickson A. Donyapour N, et al. Among authors: dickson a. J Chem Phys. 2019 Jun 28;150(24):244112. doi: 10.1063/1.5100521. J Chem Phys. 2019. PMID: 31255090 Free PMC article.
543 results