Dai Y - Search Results

1

PopPhy-CNN: A Phylogenetic Tree Embedded Architecture for Convolutional Neural Networks to Predict Host Phenotype From Metagenomic Data.

Reiman D, Metwally AA, Sun J, Dai Y. Reiman D, et al. Among authors: dai y. IEEE J Biomed Health Inform. 2020 Oct;24(10):2993-3001. doi: 10.1109/JBHI.2020.2993761. Epub 2020 May 11. IEEE J Biomed Health Inform. 2020. PMID: 32396115

2

Utilizing longitudinal microbiome taxonomic profiles to predict food allergy via Long Short-Term Memory networks.

Metwally AA, Yu PS, Reiman D, Dai Y, Finn PW, Perkins DL. Metwally AA, et al. Among authors: dai y. PLoS Comput Biol. 2019 Feb 4;15(2):e1006693. doi: 10.1371/journal.pcbi.1006693. eCollection 2019 Feb. PLoS Comput Biol. 2019. PMID: 30716085 Free PMC article.

3

MiMeNet: Exploring microbiome-metabolome relationships using neural networks.

Reiman D, Layden BT, Dai Y. Reiman D, et al. Among authors: dai y. PLoS Comput Biol. 2021 May 17;17(5):e1009021. doi: 10.1371/journal.pcbi.1009021. eCollection 2021 May. PLoS Comput Biol. 2021. PMID: 33999922 Free PMC article.

4

Predicting Host Phenotype Based on Gut Microbiome Using a Convolutional Neural Network Approach.

Reiman D, Farhat AM, Dai Y. Reiman D, et al. Among authors: dai y. Methods Mol Biol. 2021;2190:249-266. doi: 10.1007/978-1-0716-0826-5_12. Methods Mol Biol. 2021. PMID: 32804370 Review.

5

MetaLonDA: a flexible R package for identifying time intervals of differentially abundant features in metagenomic longitudinal studies.

Metwally AA, Yang J, Ascoli C, Dai Y, Finn PW, Perkins DL. Metwally AA, et al. Among authors: dai y. Microbiome. 2018 Feb 13;6(1):32. doi: 10.1186/s40168-018-0402-y. Microbiome. 2018. PMID: 29439731 Free PMC article.

6

WEVOTE: Weighted Voting Taxonomic Identification Method of Microbial Sequences.

Metwally AA, Dai Y, Finn PW, Perkins DL. Metwally AA, et al. Among authors: dai y. PLoS One. 2016 Sep 28;11(9):e0163527. doi: 10.1371/journal.pone.0163527. eCollection 2016. PLoS One. 2016. PMID: 27683082 Free PMC article.

7

Gestational Insulin Resistance Is Mediated by the Gut Microbiome-Indoleamine 2,3-Dioxygenase Axis.

Priyadarshini M, Navarro G, Reiman DJ, Sharma A, Xu K, Lednovich K, Manzella CR, Khan MW, Garcia MS, Allard S, Wicksteed B, Chlipala GE, Szynal B, Bernabe BP, Maki PM, Gill RK, Perdew GH, Gilbert J, Dai Y, Layden BT. Priyadarshini M, et al. Among authors: dai y. Gastroenterology. 2022 May;162(6):1675-1689.e11. doi: 10.1053/j.gastro.2022.01.008. Epub 2022 Jan 13. Gastroenterology. 2022. PMID: 35032499 Free PMC article.

8

In Vivo Genome-Wide PGR Binding in Pregnant Human Myometrium Identifies Potential Regulators of Labor.

Dotts AJ, Reiman D, Yin P, Kujawa S, Grobman WA, Dai Y, Bulun SE. Dotts AJ, et al. Among authors: dai y. Reprod Sci. 2023 Feb;30(2):544-559. doi: 10.1007/s43032-022-01002-0. Epub 2022 Jun 22. Reprod Sci. 2023. PMID: 35732928 Free PMC article.

9

Vitamin D receptor promotes healthy microbial metabolites and microbiome.

Chatterjee I, Lu R, Zhang Y, Zhang J, Dai Y, Xia Y, Sun J. Chatterjee I, et al. Among authors: dai y. Sci Rep. 2020 Apr 30;10(1):7340. doi: 10.1038/s41598-020-64226-7. Sci Rep. 2020. PMID: 32355205 Free PMC article.

10

Regulation of Microbiota by Vitamin D Receptor: A Nuclear Weapon in Metabolic Diseases.

Bakke D, Chatterjee I, Agrawal A, Dai Y, Sun J. Bakke D, et al. Among authors: dai y. Nucl Receptor Res. 2018;5:101377. doi: 10.11131/2018/101377. Epub 2018 Aug 9. Nucl Receptor Res. 2018. PMID: 30828578 Free PMC article.

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