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A Genomic Survey of SARS-CoV-2 Reveals Multiple Introductions into Northern California without a Predominant Lineage.
Deng X, Gu W, Federman S, du Plessis L, Pybus OG, Faria N, Wang C, Yu G, Pan CY, Guevara H, Sotomayor-Gonzalez A, Zorn K, Gopez A, Servellita V, Hsu E, Miller S, Bedford T, Greninger AL, Roychoudhury P, Starita LM, Famulare M, Chu HY, Shendure J, Jerome KR, Anderson C, Gangavarapu K, Zeller M, Spencer E, Andersen KG, MacCannell D, Paden CR, Li Y, Zhang J, Tong S, Armstrong G, Morrow S, Willis M, Matyas BT, Mase S, Kasirye O, Park M, Chan C, Yu AT, Chai SJ, Villarino E, Bonin B, Wadford DA, Chiu CY. Deng X, et al. Among authors: miller s. medRxiv [Preprint]. 2020 Mar 30:2020.03.27.20044925. doi: 10.1101/2020.03.27.20044925. medRxiv. 2020. Update in: Science. 2020 Jul 31;369(6503):582-587. doi: 10.1126/science.abb9263 PMID: 32511579 Free PMC article. Updated. Preprint.
Pandemic (H1N1) 2009 infection in patients with hematologic malignancy.
Liu C, Schwartz BS, Vallabhaneni S, Nixon M, Chin-Hong PV, Miller SA, Chiu C, Damon L, Drew WL. Liu C, et al. Among authors: miller sa. Emerg Infect Dis. 2010 Dec;16(12):1910-7. doi: 10.3201/eid1612.100772. Emerg Infect Dis. 2010. PMID: 21122221 Free PMC article.
Discovery of a novel polyomavirus in acute diarrheal samples from children.
Yu G, Greninger AL, Isa P, Phan TG, Martínez MA, de la Luz Sanchez M, Contreras JF, Santos-Preciado JI, Parsonnet J, Miller S, DeRisi JL, Delwart E, Arias CF, Chiu CY. Yu G, et al. Among authors: miller s. PLoS One. 2012;7(11):e49449. doi: 10.1371/journal.pone.0049449. Epub 2012 Nov 14. PLoS One. 2012. PMID: 23166671 Free PMC article.
Actionable diagnosis of neuroleptospirosis by next-generation sequencing.
Wilson MR, Naccache SN, Samayoa E, Biagtan M, Bashir H, Yu G, Salamat SM, Somasekar S, Federman S, Miller S, Sokolic R, Garabedian E, Candotti F, Buckley RH, Reed KD, Meyer TL, Seroogy CM, Galloway R, Henderson SL, Gern JE, DeRisi JL, Chiu CY. Wilson MR, et al. Among authors: miller s. N Engl J Med. 2014 Jun 19;370(25):2408-17. doi: 10.1056/NEJMoa1401268. Epub 2014 Jun 4. N Engl J Med. 2014. PMID: 24896819 Free PMC article.
A cloud-compatible bioinformatics pipeline for ultrarapid pathogen identification from next-generation sequencing of clinical samples.
Naccache SN, Federman S, Veeraraghavan N, Zaharia M, Lee D, Samayoa E, Bouquet J, Greninger AL, Luk KC, Enge B, Wadford DA, Messenger SL, Genrich GL, Pellegrino K, Grard G, Leroy E, Schneider BS, Fair JN, Martínez MA, Isa P, Crump JA, DeRisi JL, Sittler T, Hackett J Jr, Miller S, Chiu CY. Naccache SN, et al. Among authors: miller s. Genome Res. 2014 Jul;24(7):1180-92. doi: 10.1101/gr.171934.113. Epub 2014 Jun 4. Genome Res. 2014. PMID: 24899342 Free PMC article.
Idiopathic pneumonia syndrome after hematopoietic cell transplantation: evidence of occult infectious etiologies.
Seo S, Renaud C, Kuypers JM, Chiu CY, Huang ML, Samayoa E, Xie H, Yu G, Fisher CE, Gooley TA, Miller S, Hackman RC, Myerson D, Sedlak RH, Kim YJ, Fukuda T, Fredricks DN, Madtes DK, Jerome KR, Boeckh M. Seo S, et al. Among authors: miller s. Blood. 2015 Jun 11;125(24):3789-97. doi: 10.1182/blood-2014-12-617035. Epub 2015 Apr 27. Blood. 2015. PMID: 25918347 Free PMC article.
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