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Genomic surveillance reveals multiple introductions of SARS-CoV-2 into Northern California.
Deng X, Gu W, Federman S, du Plessis L, Pybus OG, Faria NR, Wang C, Yu G, Bushnell B, Pan CY, Guevara H, Sotomayor-Gonzalez A, Zorn K, Gopez A, Servellita V, Hsu E, Miller S, Bedford T, Greninger AL, Roychoudhury P, Starita LM, Famulare M, Chu HY, Shendure J, Jerome KR, Anderson C, Gangavarapu K, Zeller M, Spencer E, Andersen KG, MacCannell D, Paden CR, Li Y, Zhang J, Tong S, Armstrong G, Morrow S, Willis M, Matyas BT, Mase S, Kasirye O, Park M, Masinde G, Chan C, Yu AT, Chai SJ, Villarino E, Bonin B, Wadford DA, Chiu CY. Deng X, et al. Among authors: bonin b. Science. 2020 Jul 31;369(6503):582-587. doi: 10.1126/science.abb9263. Epub 2020 Jun 8. Science. 2020. PMID: 32513865 Free PMC article.
A Genomic Survey of SARS-CoV-2 Reveals Multiple Introductions into Northern California without a Predominant Lineage.
Deng X, Gu W, Federman S, du Plessis L, Pybus OG, Faria N, Wang C, Yu G, Pan CY, Guevara H, Sotomayor-Gonzalez A, Zorn K, Gopez A, Servellita V, Hsu E, Miller S, Bedford T, Greninger AL, Roychoudhury P, Starita LM, Famulare M, Chu HY, Shendure J, Jerome KR, Anderson C, Gangavarapu K, Zeller M, Spencer E, Andersen KG, MacCannell D, Paden CR, Li Y, Zhang J, Tong S, Armstrong G, Morrow S, Willis M, Matyas BT, Mase S, Kasirye O, Park M, Chan C, Yu AT, Chai SJ, Villarino E, Bonin B, Wadford DA, Chiu CY. Deng X, et al. Among authors: bonin b. medRxiv [Preprint]. 2020 Mar 30:2020.03.27.20044925. doi: 10.1101/2020.03.27.20044925. medRxiv. 2020. Update in: Science. 2020 Jul 31;369(6503):582-587. doi: 10.1126/science.abb9263 PMID: 32511579 Free PMC article. Updated. Preprint.
Introduction, Transmission Dynamics, and Fate of Early Severe Acute Respiratory Syndrome Coronavirus 2 Lineages in Santa Clara County, California.
Villarino E, Deng X, Kemper CA, Jorden MA, Bonin B, Rudman SL, Han GS, Yu G, Wang C, Federman S, Bushnell B; CZB COVIDTracker Consortium; Wadford DA, Lin W, Tao Y, Paden CR, Bhatnagar J, MacCannell T, Tong S, Batson J, Chiu CY. Villarino E, et al. Among authors: bonin b. J Infect Dis. 2021 Jul 15;224(2):207-217. doi: 10.1093/infdis/jiab199. J Infect Dis. 2021. PMID: 33893501 Free PMC article.
Epidemiologic Findings from Case Investigations and Contact Tracing for First 200 Cases of Coronavirus Disease, Santa Clara County, California, USA.
Ortiz N, Villarino E, Lee JT, Bajema KL, Ricaldi JN, Smith S, Lin W, Cortese M, Barskey AE, Da Silva JF, Bonin BJ, Rudman S, Han GS, Fischer M, Chai SJ, Cody SH; Santa Clara County COVID-19 Case Investigation Team. Ortiz N, et al. Emerg Infect Dis. 2021 May;27(5):1301-1308. doi: 10.3201/eid2705.204876. Emerg Infect Dis. 2021. PMID: 33900168 Free PMC article. Review.
Genomic Epidemiology and Transmission Dynamics of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) in Congregate Healthcare Facilities in Santa Clara County, California.
MacCannell T, Batson J, Bonin B, Astha KC, Quenelle R, Strong B, Lin W, Rudman SL, Dynerman D, Ayscue P, Han G, Kistler A, Villarino ME; Chan Zuckerberg Biohub COVIDTracker Consortium and the Santa Clara County Public Health Department’s Special Investgations Group. MacCannell T, et al. Among authors: bonin b. Clin Infect Dis. 2022 Mar 9;74(5):829-835. doi: 10.1093/cid/ciab553. Clin Infect Dis. 2022. PMID: 34328176 Free PMC article.
Severe Acute Respiratory Syndrome Coronavirus 2 and Respiratory Virus Sentinel Surveillance, California, USA, May 10, 2020-June 12, 2021.
Cooksey GLS, Morales C, Linde L, Schildhauer S, Guevara H, Chan E, Gibb K, Wong J, Lin W, Bonin BJ, Arizmendi O, Lam-Hine T, Tzvieli O, McDowell A, Kampen KM, Lopez DL, Ennis J, Lewis LS, Oren E, Hatada A, Molinar B, Frederick M, Han GS, Sanchez M, Garcia MA, McGrath A, Le NQ, Boyd E, Bertolucci RM, Corrigan J, Brodine S, Austin M, Roach WRK, Levin RM, Tyson BM, Pry JM, Cummings KJ, Wadford DA, Jain S. Cooksey GLS, et al. Among authors: bonin bj. Emerg Infect Dis. 2022 Jan;28(1):9-19. doi: 10.3201/eid2801.211682. Emerg Infect Dis. 2022. PMID: 34932449 Free PMC article. Review.
Severe acute respiratory coronavirus virus 2 (SARS-CoV-2) outbreak investigation in a hospital emergency department-California, December 2020-January 2021.
Li R, Beshearse E, Malden D, Truong H, Kraushaar V, Bonin BJ, Kim J, Kennedy I, McNary J, Han GS, Rudman SL, Perz JF, Perkins KM, Glowicz J, Epson E, Benowitz I, Villarino E. Li R, et al. Among authors: bonin bj. Infect Control Hosp Epidemiol. 2023 Jul;44(7):1187-1192. doi: 10.1017/ice.2022.39. Epub 2022 May 20. Infect Control Hosp Epidemiol. 2023. PMID: 35591783 Free PMC article.
Rapid Sentinel Surveillance for COVID-19 - Santa Clara County, California, March 2020.
Zwald ML, Lin W, Sondermeyer Cooksey GL, Weiss C, Suarez A, Fischer M, Bonin BJ, Jain S, Langley GE, Park BJ, Moulia D, Benedict R, Nguyen N, Han GS. Zwald ML, et al. MMWR Morb Mortal Wkly Rep. 2020 Apr 10;69(14):419-421. doi: 10.15585/mmwr.mm6914e3. MMWR Morb Mortal Wkly Rep. 2020. PMID: 32271724 Free PMC article.
149 results