Mayrose I - Search Results

1

ModelTeller: Model Selection for Optimal Phylogenetic Reconstruction Using Machine Learning.

Abadi S, Avram O, Rosset S, Pupko T, Mayrose I. Abadi S, et al. Among authors: mayrose i. Mol Biol Evol. 2020 Nov 1;37(11):3338-3352. doi: 10.1093/molbev/msaa154. Mol Biol Evol. 2020. PMID: 32585030

2

Rate4Site: an algorithmic tool for the identification of functional regions in proteins by surface mapping of evolutionary determinants within their homologues.

Pupko T, Bell RE, Mayrose I, Glaser F, Ben-Tal N. Pupko T, et al. Among authors: mayrose i. Bioinformatics. 2002;18 Suppl 1:S71-7. doi: 10.1093/bioinformatics/18.suppl_1.s71. Bioinformatics. 2002. PMID: 12169533

3

Comparison of site-specific rate-inference methods for protein sequences: empirical Bayesian methods are superior.

Mayrose I, Graur D, Ben-Tal N, Pupko T. Mayrose I, et al. Mol Biol Evol. 2004 Sep;21(9):1781-91. doi: 10.1093/molbev/msh194. Epub 2004 Jun 16. Mol Biol Evol. 2004. PMID: 15201400

4

Selecton: a server for detecting evolutionary forces at a single amino-acid site.

Doron-Faigenboim A, Stern A, Mayrose I, Bacharach E, Pupko T. Doron-Faigenboim A, et al. Among authors: mayrose i. Bioinformatics. 2005 May 1;21(9):2101-3. doi: 10.1093/bioinformatics/bti259. Epub 2005 Jan 12. Bioinformatics. 2005. PMID: 15647294

5

Site-specific evolutionary rate inference: taking phylogenetic uncertainty into account.

Mayrose I, Mitchell A, Pupko T. Mayrose I, et al. J Mol Evol. 2005 Mar;60(3):345-53. doi: 10.1007/s00239-004-0183-8. J Mol Evol. 2005. PMID: 15871045

6

ConSurf 2005: the projection of evolutionary conservation scores of residues on protein structures.

Landau M, Mayrose I, Rosenberg Y, Glaser F, Martz E, Pupko T, Ben-Tal N. Landau M, et al. Among authors: mayrose i. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W299-302. doi: 10.1093/nar/gki370. Nucleic Acids Res. 2005. PMID: 15980475 Free PMC article.

7

A gamma mixture model better accounts for among site rate heterogeneity.

Mayrose I, Friedman N, Pupko T. Mayrose I, et al. Bioinformatics. 2005 Sep 1;21 Suppl 2:ii151-8. doi: 10.1093/bioinformatics/bti1125. Bioinformatics. 2005. PMID: 16204095

8

Epitope mapping using combinatorial phage-display libraries: a graph-based algorithm.

Mayrose I, Shlomi T, Rubinstein ND, Gershoni JM, Ruppin E, Sharan R, Pupko T. Mayrose I, et al. Nucleic Acids Res. 2007;35(1):69-78. doi: 10.1093/nar/gkl975. Epub 2006 Dec 6. Nucleic Acids Res. 2007. PMID: 17151070 Free PMC article.

9

Stepwise prediction of conformational discontinuous B-cell epitopes using the Mapitope algorithm.

Bublil EM, Freund NT, Mayrose I, Penn O, Roitburd-Berman A, Rubinstein ND, Pupko T, Gershoni JM. Bublil EM, et al. Among authors: mayrose i. Proteins. 2007 Jul 1;68(1):294-304. doi: 10.1002/prot.21387. Proteins. 2007. PMID: 17427229

10

Towards realistic codon models: among site variability and dependency of synonymous and non-synonymous rates.

Mayrose I, Doron-Faigenboim A, Bacharach E, Pupko T. Mayrose I, et al. Bioinformatics. 2007 Jul 1;23(13):i319-27. doi: 10.1093/bioinformatics/btm176. Bioinformatics. 2007. PMID: 17646313

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