Pupko T - Search Results

1

ModelTeller: Model Selection for Optimal Phylogenetic Reconstruction Using Machine Learning.

Abadi S, Avram O, Rosset S, Pupko T, Mayrose I. Abadi S, et al. Among authors: pupko t. Mol Biol Evol. 2020 Nov 1;37(11):3338-3352. doi: 10.1093/molbev/msaa154. Mol Biol Evol. 2020. PMID: 32585030

2

A fast algorithm for joint reconstruction of ancestral amino acid sequences.

Pupko T, Pe'er I, Shamir R, Graur D. Pupko T, et al. Mol Biol Evol. 2000 Jun;17(6):890-6. doi: 10.1093/oxfordjournals.molbev.a026369. Mol Biol Evol. 2000. PMID: 10833195

3

Rate4Site: an algorithmic tool for the identification of functional regions in proteins by surface mapping of evolutionary determinants within their homologues.

Pupko T, Bell RE, Mayrose I, Glaser F, Ben-Tal N. Pupko T, et al. Bioinformatics. 2002;18 Suppl 1:S71-7. doi: 10.1093/bioinformatics/18.suppl_1.s71. Bioinformatics. 2002. PMID: 12169533

4

Comparison of site-specific rate-inference methods for protein sequences: empirical Bayesian methods are superior.

Mayrose I, Graur D, Ben-Tal N, Pupko T. Mayrose I, et al. Among authors: pupko t. Mol Biol Evol. 2004 Sep;21(9):1781-91. doi: 10.1093/molbev/msh194. Epub 2004 Jun 16. Mol Biol Evol. 2004. PMID: 15201400

5

Selecton: a server for detecting evolutionary forces at a single amino-acid site.

Doron-Faigenboim A, Stern A, Mayrose I, Bacharach E, Pupko T. Doron-Faigenboim A, et al. Among authors: pupko t. Bioinformatics. 2005 May 1;21(9):2101-3. doi: 10.1093/bioinformatics/bti259. Epub 2005 Jan 12. Bioinformatics. 2005. PMID: 15647294

6

Site-specific evolutionary rate inference: taking phylogenetic uncertainty into account.

Mayrose I, Mitchell A, Pupko T. Mayrose I, et al. Among authors: pupko t. J Mol Evol. 2005 Mar;60(3):345-53. doi: 10.1007/s00239-004-0183-8. J Mol Evol. 2005. PMID: 15871045

7

ConSurf 2005: the projection of evolutionary conservation scores of residues on protein structures.

Landau M, Mayrose I, Rosenberg Y, Glaser F, Martz E, Pupko T, Ben-Tal N. Landau M, et al. Among authors: pupko t. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W299-302. doi: 10.1093/nar/gki370. Nucleic Acids Res. 2005. PMID: 15980475 Free PMC article.

8

A gamma mixture model better accounts for among site rate heterogeneity.

Mayrose I, Friedman N, Pupko T. Mayrose I, et al. Among authors: pupko t. Bioinformatics. 2005 Sep 1;21 Suppl 2:ii151-8. doi: 10.1093/bioinformatics/bti1125. Bioinformatics. 2005. PMID: 16204095

9

An evolutionary space-time model with varying among-site dependencies.

Stern A, Pupko T. Stern A, et al. Among authors: pupko t. Mol Biol Evol. 2006 Feb;23(2):392-400. doi: 10.1093/molbev/msj044. Epub 2005 Nov 2. Mol Biol Evol. 2006. PMID: 16267143

10

A combined empirical and mechanistic codon model.

Doron-Faigenboim A, Pupko T. Doron-Faigenboim A, et al. Among authors: pupko t. Mol Biol Evol. 2007 Feb;24(2):388-97. doi: 10.1093/molbev/msl175. Epub 2006 Nov 16. Mol Biol Evol. 2007. PMID: 17110464

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