Noy A - Search Results

1

Diversification of DNA-Binding Specificity by Permissive and Specificity-Switching Mutations in the ParB/Noc Protein Family.

Jalal ASB, Tran NT, Stevenson CE, Chan EW, Lo R, Tan X, Noy A, Lawson DM, Le TBK. Jalal ASB, et al. Among authors: noy a. Cell Rep. 2020 Jul 21;32(3):107928. doi: 10.1016/j.celrep.2020.107928. Cell Rep. 2020. PMID: 32698006 Free PMC article.

2

Interference between Triplex and Protein Binding to Distal Sites on Supercoiled DNA.

Noy A, Maxwell A, Harris SA. Noy A, et al. Biophys J. 2017 Feb 7;112(3):523-531. doi: 10.1016/j.bpj.2016.12.034. Epub 2017 Jan 17. Biophys J. 2017. PMID: 28108011 Free PMC article.

3

Base-pair resolution analysis of the effect of supercoiling on DNA flexibility and major groove recognition by triplex-forming oligonucleotides.

Pyne ALB, Noy A, Main KHS, Velasco-Berrelleza V, Piperakis MM, Mitchenall LA, Cugliandolo FM, Beton JG, Stevenson CEM, Hoogenboom BW, Bates AD, Maxwell A, Harris SA. Pyne ALB, et al. Among authors: noy a. Nat Commun. 2021 Feb 16;12(1):1053. doi: 10.1038/s41467-021-21243-y. Nat Commun. 2021. PMID: 33594049 Free PMC article.

4

Integration host factor bends and bridges DNA in a multiplicity of binding modes with varying specificity.

Yoshua SB, Watson GD, Howard JAL, Velasco-Berrelleza V, Leake MC, Noy A. Yoshua SB, et al. Among authors: noy a. Nucleic Acids Res. 2021 Sep 7;49(15):8684-8698. doi: 10.1093/nar/gkab641. Nucleic Acids Res. 2021. PMID: 34352078 Free PMC article.

5

Structural interplay between DNA-shape protein recognition and supercoiling: The case of IHF.

Watson GD, Chan EW, Leake MC, Noy A. Watson GD, et al. Among authors: noy a. Comput Struct Biotechnol J. 2022 Sep 19;20:5264-5274. doi: 10.1016/j.csbj.2022.09.020. eCollection 2022. Comput Struct Biotechnol J. 2022. PMID: 36212531 Free PMC article.

6

The emergence of sequence-dependent structural motifs in stretched, torsionally constrained DNA.

Shepherd JW, Greenall RJ, Probert MIJ, Noy A, Leake MC. Shepherd JW, et al. Among authors: noy a. Nucleic Acids Res. 2020 Feb 28;48(4):1748-1763. doi: 10.1093/nar/gkz1227. Nucleic Acids Res. 2020. PMID: 31930331 Free PMC article.

7

Atomistic Molecular Dynamics Simulations of DNA in Complex 3D Arrangements for Comparison with Lower Resolution Structural Experiments.

Watson G, Velasco-Berrelleza V, Noy A. Watson G, et al. Among authors: noy a. Methods Mol Biol. 2022;2476:95-109. doi: 10.1007/978-1-0716-2221-6_8. Methods Mol Biol. 2022. PMID: 35635699

8

SerraNA: a program to determine nucleic acids elasticity from simulation data.

Velasco-Berrelleza V , Burman M , Shepherd JW , Leake MC , Golestanian R , Noy A . Velasco-Berrelleza V , et al. Among authors: noy a. Phys Chem Chem Phys. 2020 Sep 14;22(34):19254-19266. doi: 10.1039/d0cp02713h. Epub 2020 Aug 20. Phys Chem Chem Phys. 2020. PMID: 32902529

9

Small DNA circles as probes of DNA topology.

Bates AD, Noy A, Piperakis MM, Harris SA, Maxwell A. Bates AD, et al. Among authors: noy a. Biochem Soc Trans. 2013 Apr;41(2):565-70. doi: 10.1042/BST20120320. Biochem Soc Trans. 2013. PMID: 23514155 Review.

10

Parmbsc1: a refined force field for DNA simulations.

Ivani I, Dans PD, Noy A, Pérez A, Faustino I, Hospital A, Walther J, Andrio P, Goñi R, Balaceanu A, Portella G, Battistini F, Gelpí JL, González C, Vendruscolo M, Laughton CA, Harris SA, Case DA, Orozco M. Ivani I, et al. Among authors: noy a. Nat Methods. 2016 Jan;13(1):55-8. doi: 10.1038/nmeth.3658. Epub 2015 Nov 16. Nat Methods. 2016. PMID: 26569599 Free PMC article.

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