Bonizzoni P - Search Results

1

Inferring cancer progression from Single-Cell Sequencing while allowing mutation losses.

Ciccolella S, Ricketts C, Soto Gomez M, Patterson M, Silverbush D, Bonizzoni P, Hajirasouliha I, Della Vedova G. Ciccolella S, et al. Among authors: bonizzoni p. Bioinformatics. 2021 Apr 20;37(3):326-333. doi: 10.1093/bioinformatics/btaa722. Bioinformatics. 2021. PMID: 32805010 Free PMC article.

2

Exemplar longest common subsequence.

Bonizzoni P, Della Vedova G, Dondi R, Fertin G, Rizzi R, Vialette S. Bonizzoni P, et al. IEEE/ACM Trans Comput Biol Bioinform. 2007 Oct-Dec;4(4):535-43. doi: 10.1109/TCBB.2007.1066. IEEE/ACM Trans Comput Biol Bioinform. 2007. PMID: 17975265

3

Experimental analysis of a new algorithm for partial haplotype completion.

Bonizzoni P, Della Vedova G, Dondi R, Mariani L. Bonizzoni P, et al. Int J Bioinform Res Appl. 2005;1(4):461-73. doi: 10.1504/IJBRA.2005.008448. Int J Bioinform Res Appl. 2005. PMID: 18048149

4

Pure parsimony xor haplotyping.

Bonizzoni P, Della Vedova G, Dondi R, Pirola Y, Rizzi R. Bonizzoni P, et al. IEEE/ACM Trans Comput Biol Bioinform. 2010 Oct-Dec;7(4):598-610. doi: 10.1109/TCBB.2010.52. IEEE/ACM Trans Comput Biol Bioinform. 2010. PMID: 20498511

5

PIntron: a fast method for detecting the gene structure due to alternative splicing via maximal pairings of a pattern and a text.

Pirola Y, Rizzi R, Picardi E, Pesole G, Della Vedova G, Bonizzoni P. Pirola Y, et al. Among authors: bonizzoni p. BMC Bioinformatics. 2012 Apr 12;13 Suppl 5(Suppl 5):S2. doi: 10.1186/1471-2105-13-S5-S2. BMC Bioinformatics. 2012. PMID: 22537006 Free PMC article.

6

A fast and practical approach to genotype phasing and imputation on a pedigree with erroneous and incomplete information.

Pirola Y, Della Vedova G, Biffani S, Stella A, Bonizzoni P. Pirola Y, et al. Among authors: bonizzoni p. IEEE/ACM Trans Comput Biol Bioinform. 2012 Nov-Dec;9(6):1582-94. doi: 10.1109/TCBB.2012.100. IEEE/ACM Trans Comput Biol Bioinform. 2012. PMID: 22848137

7

Further steps in TANGO: improved taxonomic assignment in metagenomics.

Alonso-Alemany D, Barré A, Beretta S, Bonizzoni P, Nikolski M, Valiente G. Alonso-Alemany D, et al. Among authors: bonizzoni p. Bioinformatics. 2014 Jan 1;30(1):17-23. doi: 10.1093/bioinformatics/btt256. Epub 2013 May 3. Bioinformatics. 2014. PMID: 23645816

8

Explaining evolution via constrained persistent perfect phylogeny.

Bonizzoni P, Carrieri AP, Della Vedova G, Trucco G. Bonizzoni P, et al. BMC Genomics. 2014;15 Suppl 6(Suppl 6):S10. doi: 10.1186/1471-2164-15-S6-S10. Epub 2014 Oct 17. BMC Genomics. 2014. PMID: 25572381 Free PMC article.

9

Transcriptome assembly and alternative splicing analysis.

Bonizzoni P, Della Vedova G, Pesole G, Picardi E, Pirola Y, Rizzi R. Bonizzoni P, et al. Methods Mol Biol. 2015;1269:173-88. doi: 10.1007/978-1-4939-2291-8_11. Methods Mol Biol. 2015. PMID: 25577379

10

HapCol: accurate and memory-efficient haplotype assembly from long reads.

Pirola Y, Zaccaria S, Dondi R, Klau GW, Pisanti N, Bonizzoni P. Pirola Y, et al. Among authors: bonizzoni p. Bioinformatics. 2016 Jun 1;32(11):1610-7. doi: 10.1093/bioinformatics/btv495. Epub 2015 Aug 26. Bioinformatics. 2016. PMID: 26315913 Free article.

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