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Page 1
BraInMap Elucidates the Macromolecular Connectivity Landscape of Mammalian Brain.
Pourhaghighi R, Ash PEA, Phanse S, Goebels F, Hu LZM, Chen S, Zhang Y, Wierbowski SD, Boudeau S, Moutaoufik MT, Malty RH, Malolepsza E, Tsafou K, Nathan A, Cromar G, Guo H, Al Abdullatif A, Apicco DJ, Becker LA, Gitler AD, Pulst SM, Youssef A, Hekman R, Havugimana PC, White CA, Blum BC, Ratti A, Bryant CD, Parkinson J, Lage K, Babu M, Yu H, Bader GD, Wolozin B, Emili A. Pourhaghighi R, et al. Among authors: parkinson j. Cell Syst. 2020 Aug 26;11(2):208. doi: 10.1016/j.cels.2020.08.006. Cell Syst. 2020. PMID: 32853540 Free article. No abstract available.
Panorama of ancient metazoan macromolecular complexes.
Wan C, Borgeson B, Phanse S, Tu F, Drew K, Clark G, Xiong X, Kagan O, Kwan J, Bezginov A, Chessman K, Pal S, Cromar G, Papoulas O, Ni Z, Boutz DR, Stoilova S, Havugimana PC, Guo X, Malty RH, Sarov M, Greenblatt J, Babu M, Derry WB, Tillier ER, Wallingford JB, Parkinson J, Marcotte EM, Emili A. Wan C, et al. Among authors: parkinson j. Nature. 2015 Sep 17;525(7569):339-44. doi: 10.1038/nature14877. Epub 2015 Sep 7. Nature. 2015. PMID: 26344197 Free PMC article.
Conditional Epistatic Interaction Maps Reveal Global Functional Rewiring of Genome Integrity Pathways in Escherichia coli.
Kumar A, Beloglazova N, Bundalovic-Torma C, Phanse S, Deineko V, Gagarinova A, Musso G, Vlasblom J, Lemak S, Hooshyar M, Minic Z, Wagih O, Mosca R, Aloy P, Golshani A, Parkinson J, Emili A, Yakunin AF, Babu M. Kumar A, et al. Among authors: parkinson j. Cell Rep. 2016 Jan 26;14(3):648-661. doi: 10.1016/j.celrep.2015.12.060. Epub 2016 Jan 8. Cell Rep. 2016. PMID: 26774489 Free article.
Proteome-wide dataset supporting the study of ancient metazoan macromolecular complexes.
Phanse S, Wan C, Borgeson B, Tu F, Drew K, Clark G, Xiong X, Kagan O, Kwan J, Bezginov A, Chessman K, Pal S, Cromar G, Papoulas O, Ni Z, Boutz DR, Stoilova S, Havugimana PC, Guo X, Malty RH, Sarov M, Greenblatt J, Babu M, Derry WB, Tillier ER, Wallingford JB, Parkinson J, Marcotte EM, Emili A. Phanse S, et al. Among authors: parkinson j. Data Brief. 2015 Dec 12;6:715-21. doi: 10.1016/j.dib.2015.11.062. eCollection 2016 Mar. Data Brief. 2015. PMID: 26870755 Free PMC article.
A Map of Human Mitochondrial Protein Interactions Linked to Neurodegeneration Reveals New Mechanisms of Redox Homeostasis and NF-κB Signaling.
Malty RH, Aoki H, Kumar A, Phanse S, Amin S, Zhang Q, Minic Z, Goebels F, Musso G, Wu Z, Abou-Tok H, Meyer M, Deineko V, Kassir S, Sidhu V, Jessulat M, Scott NE, Xiong X, Vlasblom J, Prasad B, Foster LJ, Alberio T, Garavaglia B, Yu H, Bader GD, Nakamura K, Parkinson J, Babu M. Malty RH, et al. Among authors: parkinson j. Cell Syst. 2017 Dec 27;5(6):564-577.e12. doi: 10.1016/j.cels.2017.10.010. Epub 2017 Nov 8. Cell Syst. 2017. PMID: 29128334 Free PMC article.
BraInMap Elucidates the Macromolecular Connectivity Landscape of Mammalian Brain.
Pourhaghighi R, Ash PEA, Phanse S, Goebels F, Hu LZM, Chen S, Zhang Y, Wierbowski SD, Boudeau S, Moutaoufik MT, Malty RH, Malolepsza E, Tsafou K, Nathan A, Cromar G, Guo H, Abdullatif AA, Apicco DJ, Becker LA, Gitler AD, Pulst SM, Youssef A, Hekman R, Havugimana PC, White CA, Blum BC, Ratti A, Bryant CD, Parkinson J, Lage K, Babu M, Yu H, Bader GD, Wolozin B, Emili A. Pourhaghighi R, et al. Among authors: parkinson j. Cell Syst. 2020 Apr 22;10(4):333-350.e14. doi: 10.1016/j.cels.2020.03.003. Cell Syst. 2020. PMID: 32325033 Free PMC article.
Cell++--simulating biochemical pathways.
Sanford C, Yip ML, White C, Parkinson J. Sanford C, et al. Among authors: parkinson j. Bioinformatics. 2006 Dec 1;22(23):2918-25. doi: 10.1093/bioinformatics/btl497. Epub 2006 Oct 11. Bioinformatics. 2006. PMID: 17038347
Bacteriome.org--an integrated protein interaction database for E. coli.
Su C, Peregrin-Alvarez JM, Butland G, Phanse S, Fong V, Emili A, Parkinson J. Su C, et al. Among authors: parkinson j. Nucleic Acids Res. 2008 Jan;36(Database issue):D632-6. doi: 10.1093/nar/gkm807. Epub 2007 Oct 16. Nucleic Acids Res. 2008. PMID: 17942431 Free PMC article.
Hyperscape: visualization for complex biological networks.
Cromar GL, Zhao A, Yang A, Parkinson J. Cromar GL, et al. Among authors: parkinson j. Bioinformatics. 2015 Oct 15;31(20):3390-1. doi: 10.1093/bioinformatics/btv385. Epub 2015 Jun 24. Bioinformatics. 2015. PMID: 26108529
941 results