Zuckerman DM - Search Results

1

Connexin-46/50 in a dynamic lipid environment resolved by CryoEM at 1.9 Å.

Flores JA, Haddad BG, Dolan KA, Myers JB, Yoshioka CC, Copperman J, Zuckerman DM, Reichow SL. Flores JA, et al. Among authors: zuckerman dm. Nat Commun. 2020 Aug 28;11(1):4331. doi: 10.1038/s41467-020-18120-5. Nat Commun. 2020. PMID: 32859914 Free PMC article.

2

Structure of native lens connexin 46/50 intercellular channels by cryo-EM.

Myers JB, Haddad BG, O'Neill SE, Chorev DS, Yoshioka CC, Robinson CV, Zuckerman DM, Reichow SL. Myers JB, et al. Among authors: zuckerman dm. Nature. 2018 Dec;564(7736):372-377. doi: 10.1038/s41586-018-0786-7. Epub 2018 Dec 12. Nature. 2018. PMID: 30542154 Free PMC article.

3

Computational Estimation of Microsecond to Second Atomistic Folding Times.

Adhikari U, Mostofian B, Copperman J, Subramanian SR, Petersen AA, Zuckerman DM. Adhikari U, et al. Among authors: zuckerman dm. J Am Chem Soc. 2019 Apr 24;141(16):6519-6526. doi: 10.1021/jacs.8b10735. Epub 2019 Apr 12. J Am Chem Soc. 2019. PMID: 30892023 Free PMC article.

4

Transient probability currents provide upper and lower bounds on non-equilibrium steady-state currents in the Smoluchowski picture.

Copperman J, Aristoff D, Makarov DE, Simpson G, Zuckerman DM. Copperman J, et al. Among authors: zuckerman dm. J Chem Phys. 2019 Nov 7;151(17):174108. doi: 10.1063/1.5120511. J Chem Phys. 2019. PMID: 31703496 Free PMC article.

5

Accelerated Estimation of Long-Timescale Kinetics from Weighted Ensemble Simulation via Non-Markovian "Microbin" Analysis.

Copperman J, Zuckerman DM. Copperman J, et al. Among authors: zuckerman dm. J Chem Theory Comput. 2020 Nov 10;16(11):6763-6775. doi: 10.1021/acs.jctc.0c00273. Epub 2020 Oct 13. J Chem Theory Comput. 2020. PMID: 32990438 Free PMC article.

6

Connexin 46 and connexin 50 gap junction channel properties are shaped by structural and dynamic features of their N-terminal domains.

Yue B, Haddad BG, Khan U, Chen H, Atalla M, Zhang Z, Zuckerman DM, Reichow SL, Bai D. Yue B, et al. Among authors: zuckerman dm. J Physiol. 2021 Jul;599(13):3313-3335. doi: 10.1113/JP281339. Epub 2021 May 13. J Physiol. 2021. PMID: 33876426 Free PMC article.

7

WESTPA 2.0: High-Performance Upgrades for Weighted Ensemble Simulations and Analysis of Longer-Timescale Applications.

Russo JD, Zhang S, Leung JMG, Bogetti AT, Thompson JP, DeGrave AJ, Torrillo PA, Pratt AJ, Wong KF, Xia J, Copperman J, Adelman JL, Zwier MC, LeBard DN, Zuckerman DM, Chong LT. Russo JD, et al. Among authors: zuckerman dm. J Chem Theory Comput. 2022 Feb 8;18(2):638-649. doi: 10.1021/acs.jctc.1c01154. Epub 2022 Jan 19. J Chem Theory Comput. 2022. PMID: 35043623 Free PMC article.

8

Continuum dynamics and statistical correction of compositional heterogeneity in multivalent IDP oligomers resolved by single-particle EM.

Mostofian B, McFarland R, Estelle A, Howe J, Barbar E, Reichow SL, Zuckerman DM. Mostofian B, et al. Among authors: zuckerman dm. J Mol Biol. 2022 May 15;434(9):167520. doi: 10.1016/j.jmb.2022.167520. Epub 2022 Mar 1. J Mol Biol. 2022. PMID: 35245498 Free PMC article.

9

Weighted ensemble: Recent mathematical developments.

Aristoff D, Copperman J, Simpson G, Webber RJ, Zuckerman DM. Aristoff D, et al. Among authors: zuckerman dm. J Chem Phys. 2023 Jan 7;158(1):014108. doi: 10.1063/5.0110873. J Chem Phys. 2023. PMID: 36610976 Free PMC article.

10

Morphodynamical cell state description via live-cell imaging trajectory embedding.

Copperman J, Gross SM, Chang YH, Heiser LM, Zuckerman DM. Copperman J, et al. Among authors: zuckerman dm. Commun Biol. 2023 May 4;6(1):484. doi: 10.1038/s42003-023-04837-8. Commun Biol. 2023. PMID: 37142678 Free PMC article.

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