Sinha S - Search Results

1

SERGIO: A Single-Cell Expression Simulator Guided by Gene Regulatory Networks.

Dibaeinia P, Sinha S. Dibaeinia P, et al. Among authors: sinha s. Cell Syst. 2020 Sep 23;11(3):252-271.e11. doi: 10.1016/j.cels.2020.08.003. Epub 2020 Aug 31. Cell Syst. 2020. PMID: 32871105 Free PMC article.

2

Transcriptional regulation of brain gene expression in response to a territorial intrusion.

Sanogo YO, Band M, Blatti C, Sinha S, Bell AM. Sanogo YO, et al. Among authors: sinha s. Proc Biol Sci. 2012 Dec 22;279(1749):4929-38. doi: 10.1098/rspb.2012.2087. Epub 2012 Oct 24. Proc Biol Sci. 2012. PMID: 23097509 Free PMC article.

3

Integrating motif, DNA accessibility and gene expression data to build regulatory maps in an organism.

Blatti C, Kazemian M, Wolfe S, Brodsky M, Sinha S. Blatti C, et al. Among authors: sinha s. Nucleic Acids Res. 2015 Apr 30;43(8):3998-4012. doi: 10.1093/nar/gkv195. Epub 2015 Mar 19. Nucleic Acids Res. 2015. PMID: 25791631 Free PMC article.

4

A Systematic Ensemble Approach to Thermodynamic Modeling of Gene Expression from Sequence Data.

Samee MA, Lim B, Samper N, Lu H, Rushlow CA, Jiménez G, Shvartsman SY, Sinha S. Samee MA, et al. Among authors: sinha s. Cell Syst. 2015 Dec 23;1(6):396-407. doi: 10.1016/j.cels.2015.12.002. Epub 2015 Dec 23. Cell Syst. 2015. PMID: 27136354 Free PMC article.

5

Characterizing gene sets using discriminative random walks with restart on heterogeneous biological networks.

Blatti C, Sinha S. Blatti C, et al. Among authors: sinha s. Bioinformatics. 2016 Jul 15;32(14):2167-75. doi: 10.1093/bioinformatics/btw151. Epub 2016 Mar 19. Bioinformatics. 2016. PMID: 27153592 Free PMC article.

6

A novel method for predicting activity of cis-regulatory modules, based on a diverse training set.

Yang W, Sinha S. Yang W, et al. Among authors: sinha s. Bioinformatics. 2017 Jan 1;33(1):1-7. doi: 10.1093/bioinformatics/btw552. Epub 2016 Sep 7. Bioinformatics. 2017. PMID: 27609510 Free PMC article.

7

Transcriptional regulatory dynamics drive coordinated metabolic and neural response to social challenge in mice.

Saul MC, Seward CH, Troy JM, Zhang H, Sloofman LG, Lu X, Weisner PA, Caetano-Anolles D, Sun H, Zhao SD, Chandrasekaran S, Sinha S, Stubbs L. Saul MC, et al. Among authors: sinha s. Genome Res. 2017 Jun;27(6):959-972. doi: 10.1101/gr.214221.116. Epub 2017 Mar 29. Genome Res. 2017. PMID: 28356321 Free PMC article.

8

Knowledge-guided gene prioritization reveals new insights into the mechanisms of chemoresistance.

Emad A, Cairns J, Kalari KR, Wang L, Sinha S. Emad A, et al. Among authors: sinha s. Genome Biol. 2017 Aug 11;18(1):153. doi: 10.1186/s13059-017-1282-3. Genome Biol. 2017. PMID: 28800781 Free PMC article.

9

A closer look at cross-validation for assessing the accuracy of gene regulatory networks and models.

Tabe-Bordbar S, Emad A, Zhao SD, Sinha S. Tabe-Bordbar S, et al. Among authors: sinha s. Sci Rep. 2018 Apr 26;8(1):6620. doi: 10.1038/s41598-018-24937-4. Sci Rep. 2018. PMID: 29700343 Free PMC article.

10

An information theoretic treatment of sequence-to-expression modeling.

Khajouei F, Sinha S. Khajouei F, et al. Among authors: sinha s. PLoS Comput Biol. 2018 Sep 26;14(9):e1006459. doi: 10.1371/journal.pcbi.1006459. eCollection 2018 Sep. PLoS Comput Biol. 2018. PMID: 30256780 Free PMC article.

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