Kléma J - Search Results

1

Finding semantic patterns in omics data using concept rule learning with an ontology-based refinement operator.

Malinka F, Železný F, Kléma J. Malinka F, et al. Among authors: klema j. BioData Min. 2020 Sep 1;13:13. doi: 10.1186/s13040-020-00219-6. eCollection 2020. BioData Min. 2020. PMID: 32905086 Free PMC article.

2

Comparative evaluation of set-level techniques in predictive classification of gene expression samples.

Holec M, Kléma J, Zelezný F, Tolar J. Holec M, et al. Among authors: klema j. BMC Bioinformatics. 2012 Jun 25;13 Suppl 10(Suppl 10):S15. doi: 10.1186/1471-2105-13-S10-S15. BMC Bioinformatics. 2012. PMID: 22759420 Free PMC article.

3

Semantic biclustering for finding local, interpretable and predictive expression patterns.

Kléma J, Malinka F, Železný F. Kléma J, et al. BMC Genomics. 2017 Oct 16;18(Suppl 7):752. doi: 10.1186/s12864-017-4132-5. BMC Genomics. 2017. PMID: 29513193 Free PMC article.

4

Semantic clustering analysis of E3-ubiquitin ligases in gastrointestinal tract defines genes ontology clusters with tissue expression patterns.

Iatsiuk V, Malinka F, Pickova M, Tureckova J, Klema J, Spoutil F, Novosadova V, Prochazka J, Sedlacek R. Iatsiuk V, et al. Among authors: klema j. BMC Gastroenterol. 2022 Apr 12;22(1):186. doi: 10.1186/s12876-022-02265-2. BMC Gastroenterol. 2022. PMID: 35413796 Free PMC article.

5

Network-constrained forest for regularized classification of omics data.

Anděl M, Kléma J, Krejčík Z. Anděl M, et al. Among authors: klema j. Methods. 2015 Jul 15;83:88-97. doi: 10.1016/j.ymeth.2015.04.006. Epub 2015 Apr 11. Methods. 2015. PMID: 25872185

6

The Differential Effect of Carbon Dots on Gene Expression and DNA Methylation of Human Embryonic Lung Fibroblasts as a Function of Surface Charge and Dose.

Sima M, Vrbova K, Zavodna T, Honkova K, Chvojkova I, Ambroz A, Klema J, Rossnerova A, Polakova K, Malina T, Belza J, Topinka J, Rossner P Jr. Sima M, et al. Among authors: klema j. Int J Mol Sci. 2020 Jul 4;21(13):4763. doi: 10.3390/ijms21134763. Int J Mol Sci. 2020. PMID: 32635498 Free PMC article.

7

On tower and checkerboard neural network architectures for gene expression inference.

Kunc V, Kléma J. Kunc V, et al. Among authors: klema j. BMC Genomics. 2020 Dec 16;21(Suppl 5):454. doi: 10.1186/s12864-020-06821-6. BMC Genomics. 2020. PMID: 33327945 Free PMC article.

8

Empirical evidence of the applicability of functional clustering through gene expression classification.

Krejník M, Kléma J. Krejník M, et al. Among authors: klema j. IEEE/ACM Trans Comput Biol Bioinform. 2012 May-Jun;9(3):788-98. doi: 10.1109/TCBB.2012.23. IEEE/ACM Trans Comput Biol Bioinform. 2012. PMID: 22291159

9

On transformative adaptive activation functions in neural networks for gene expression inference.

Kunc V, Kléma J. Kunc V, et al. Among authors: klema j. PLoS One. 2021 Jan 14;16(1):e0243915. doi: 10.1371/journal.pone.0243915. eCollection 2021. PLoS One. 2021. PMID: 33444316 Free PMC article.

10

Improved recovery and annotation of genes in metagenomes through the prediction of fungal introns.

Le AV, Větrovský T, Barucic D, Saraiva JP, Dobbler PT, Kohout P, Pospíšek M, da Rocha UN, Kléma J, Baldrian P. Le AV, et al. Among authors: klema j. Mol Ecol Resour. 2023 Nov;23(8):1800-1811. doi: 10.1111/1755-0998.13852. Epub 2023 Aug 10. Mol Ecol Resour. 2023. PMID: 37561110

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