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PD-1 marks dysfunctional regulatory T cells in malignant gliomas.
Lowther DE, Goods BA, Lucca LE, Lerner BA, Raddassi K, van Dijk D, Hernandez AL, Duan X, Gunel M, Coric V, Krishnaswamy S, Love JC, Hafler DA. Lowther DE, et al. Among authors: van dijk d. JCI Insight. 2016 Apr 21;1(5):e85935. doi: 10.1172/jci.insight.85935. JCI Insight. 2016. PMID: 27182555 Free PMC article.
Exploring single-cell data with deep multitasking neural networks.
Amodio M, van Dijk D, Srinivasan K, Chen WS, Mohsen H, Moon KR, Campbell A, Zhao Y, Wang X, Venkataswamy M, Desai A, Ravi V, Kumar P, Montgomery R, Wolf G, Krishnaswamy S. Amodio M, et al. Among authors: van dijk d. Nat Methods. 2019 Nov;16(11):1139-1145. doi: 10.1038/s41592-019-0576-7. Epub 2019 Oct 7. Nat Methods. 2019. PMID: 31591579 Free PMC article.
Visualizing structure and transitions in high-dimensional biological data.
Moon KR, van Dijk D, Wang Z, Gigante S, Burkhardt DB, Chen WS, Yim K, Elzen AVD, Hirn MJ, Coifman RR, Ivanova NB, Wolf G, Krishnaswamy S. Moon KR, et al. Among authors: van dijk d. Nat Biotechnol. 2019 Dec;37(12):1482-1492. doi: 10.1038/s41587-019-0336-3. Epub 2019 Dec 3. Nat Biotechnol. 2019. PMID: 31796933 Free PMC article.
Uncovering axes of variation among single-cell cancer specimens.
Chen WS, Zivanovic N, van Dijk D, Wolf G, Bodenmiller B, Krishnaswamy S. Chen WS, et al. Among authors: van dijk d. Nat Methods. 2020 Mar;17(3):302-310. doi: 10.1038/s41592-019-0689-z. Epub 2020 Jan 13. Nat Methods. 2020. PMID: 31932777 Free PMC article.
Coarse Graining of Data via Inhomogeneous Diffusion Condensation.
Brugnone N, Gonopolskiy A, Moyle MW, Kuchroo M, van Dijk D, Moon KR, Colon-Ramos D, Wolf G, Hirn MJ, Krishnaswamy S. Brugnone N, et al. Among authors: van dijk d. Proc IEEE Int Conf Big Data. 2019 Dec;2019:2624-2633. doi: 10.1109/BigData47090.2019.9006013. Epub 2020 Feb 24. Proc IEEE Int Conf Big Data. 2019. PMID: 32747879 Free PMC article.
Quantifying the effect of experimental perturbations at single-cell resolution.
Burkhardt DB, Stanley JS 3rd, Tong A, Perdigoto AL, Gigante SA, Herold KC, Wolf G, Giraldez AJ, van Dijk D, Krishnaswamy S. Burkhardt DB, et al. Among authors: van dijk d. Nat Biotechnol. 2021 May;39(5):619-629. doi: 10.1038/s41587-020-00803-5. Epub 2021 Feb 8. Nat Biotechnol. 2021. PMID: 33558698 Free PMC article.
Immune dysregulation and autoreactivity correlate with disease severity in SARS-CoV-2-associated multisystem inflammatory syndrome in children.
Ramaswamy A, Brodsky NN, Sumida TS, Comi M, Asashima H, Hoehn KB, Li N, Liu Y, Shah A, Ravindra NG, Bishai J, Khan A, Lau W, Sellers B, Bansal N, Guerrerio P, Unterman A, Habet V, Rice AJ, Catanzaro J, Chandnani H, Lopez M, Kaminski N, Dela Cruz CS, Tsang JS, Wang Z, Yan X, Kleinstein SH, van Dijk D, Pierce RW, Hafler DA, Lucas CL. Ramaswamy A, et al. Among authors: van dijk d. Immunity. 2021 May 11;54(5):1083-1095.e7. doi: 10.1016/j.immuni.2021.04.003. Epub 2021 Apr 13. Immunity. 2021. PMID: 33891889 Free PMC article.
Interpretable Neuron Structuring with Graph Spectral Regularization.
Tong A, van Dijk D, Stanley JS 3rd, Amodio M, Yim K, Muhle R, Noonan J, Wolf G, Krishnaswamy S. Tong A, et al. Among authors: van dijk d. Adv Intell Data Anal. 2020 Apr;12080:509-521. doi: 10.1007/978-3-030-44584-3_40. Epub 2020 Apr 22. Adv Intell Data Anal. 2020. PMID: 34131660 Free PMC article.
302 results