Heitsch CE - Search Results

1

On the Problem of Reconstructing a Mixture of RNA Structures.

Greenwood T, Heitsch CE. Greenwood T, et al. Among authors: heitsch ce. Bull Math Biol. 2020 Oct 7;82(10):133. doi: 10.1007/s11538-020-00804-0. Bull Math Biol. 2020. PMID: 33029669 Free PMC article.

2

Large deviations for random trees and the branching of RNA secondary structures.

Bakhtin Y, Heitsch CE. Bakhtin Y, et al. Among authors: heitsch ce. Bull Math Biol. 2009 Jan;71(1):84-106. doi: 10.1007/s11538-008-9353-y. Epub 2008 Dec 13. Bull Math Biol. 2009. PMID: 19083065 Free PMC article.

3

Parametric analysis of RNA branching configurations.

Hower V, Heitsch CE. Hower V, et al. Among authors: heitsch ce. Bull Math Biol. 2011 Apr;73(4):754-76. doi: 10.1007/s11538-010-9607-3. Epub 2011 Jan 5. Bull Math Biol. 2011. PMID: 21207176

4

Asymptotic distribution of motifs in a stochastic context-free grammar model of RNA folding.

Poznanović S, Heitsch CE. Poznanović S, et al. Among authors: heitsch ce. J Math Biol. 2014 Dec;69(6-7):1743-72. doi: 10.1007/s00285-013-0750-y. Epub 2014 Jan 3. J Math Biol. 2014. PMID: 24384698 Free PMC article.

5

Finding 3D motifs in ribosomal RNA structures.

Apostolico A, Ciriello G, Guerra C, Heitsch CE, Hsiao C, Williams LD. Apostolico A, et al. Among authors: heitsch ce. Nucleic Acids Res. 2009 Mar;37(4):e29. doi: 10.1093/nar/gkn1044. Epub 2009 Jan 21. Nucleic Acids Res. 2009. PMID: 19158187 Free PMC article.

6

New insights from cluster analysis methods for RNA secondary structure prediction.

Rogers E, Heitsch C. Rogers E, et al. Wiley Interdiscip Rev RNA. 2016 May;7(3):278-94. doi: 10.1002/wrna.1334. Epub 2016 Mar 11. Wiley Interdiscip Rev RNA. 2016. PMID: 26971529 Free PMC article. Review.

7

Conditioning and Robustness of RNA Boltzmann Sampling under Thermodynamic Parameter Perturbations.

Rogers E, Murrugarra D, Heitsch C. Rogers E, et al. Biophys J. 2017 Jul 25;113(2):321-329. doi: 10.1016/j.bpj.2017.05.026. Epub 2017 Jun 16. Biophys J. 2017. PMID: 28629618 Free PMC article.

8

The challenge of RNA branching prediction: a parametric analysis of multiloop initiation under thermodynamic optimization.

Poznanović S, Barrera-Cruz F, Kirkpatrick A, Ielusic M, Heitsch C. Poznanović S, et al. J Struct Biol. 2020 Apr 1;210(1):107475. doi: 10.1016/j.jsb.2020.107475. Epub 2020 Feb 4. J Struct Biol. 2020. PMID: 32032754

9

GTfold: enabling parallel RNA secondary structure prediction on multi-core desktops.

Swenson MS, Anderson J, Ash A, Gaurav P, Sükösd Z, Bader DA, Harvey SC, Heitsch CE. Swenson MS, et al. Among authors: heitsch ce. BMC Res Notes. 2012 Jul 2;5:341. doi: 10.1186/1756-0500-5-341. BMC Res Notes. 2012. PMID: 22747589 Free PMC article.

10

Improving RNA Branching Predictions: Advances and Limitations.

Poznanović S, Wood C, Cloer M, Heitsch C. Poznanović S, et al. Genes (Basel). 2021 Mar 25;12(4):469. doi: 10.3390/genes12040469. Genes (Basel). 2021. PMID: 33805944 Free PMC article.

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