Novák P - Search Results

1

Repeat-sequence turnover shifts fundamentally in species with large genomes.

Novák P, Guignard MS, Neumann P, Kelly LJ, Mlinarec J, Koblížková A, Dodsworth S, Kovařík A, Pellicer J, Wang W, Macas J, Leitch IJ, Leitch AR. Novák P, et al. Nat Plants. 2020 Nov;6(11):1325-1329. doi: 10.1038/s41477-020-00785-x. Epub 2020 Oct 19. Nat Plants. 2020. PMID: 33077876

2

Global sequence characterization of rice centromeric satellite based on oligomer frequency analysis in large-scale sequencing data.

Macas J, Neumann P, Novák P, Jiang J. Macas J, et al. Among authors: novak p. Bioinformatics. 2010 Sep 1;26(17):2101-8. doi: 10.1093/bioinformatics/btq343. Epub 2010 Jul 8. Bioinformatics. 2010. PMID: 20616383

3

Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data.

Novák P, Neumann P, Macas J. Novák P, et al. BMC Bioinformatics. 2010 Jul 15;11:378. doi: 10.1186/1471-2105-11-378. BMC Bioinformatics. 2010. PMID: 20633259 Free PMC article.

4

Next generation sequencing reveals genome downsizing in allotetraploid Nicotiana tabacum, predominantly through the elimination of paternally derived repetitive DNAs.

Renny-Byfield S, Chester M, Kovařík A, Le Comber SC, Grandbastien MA, Deloger M, Nichols RA, Macas J, Novák P, Chase MW, Leitch AR. Renny-Byfield S, et al. Among authors: novak p. Mol Biol Evol. 2011 Oct;28(10):2843-54. doi: 10.1093/molbev/msr112. Epub 2011 Apr 21. Mol Biol Evol. 2011. PMID: 21512105

5

Next generation sequencing-based analysis of repetitive DNA in the model dioecious [corrected] plant Silene latifolia.

Macas J, Kejnovský E, Neumann P, Novák P, Koblížková A, Vyskot B. Macas J, et al. Among authors: novak p. PLoS One. 2011;6(11):e27335. doi: 10.1371/journal.pone.0027335. Epub 2011 Nov 9. PLoS One. 2011. PMID: 22096552 Free PMC article.

6

Survey sequencing reveals elevated DNA transposon activity, novel elements, and variation in repetitive landscapes among vesper bats.

Pagán HJ, Macas J, Novák P, McCulloch ES, Stevens RD, Ray DA. Pagán HJ, et al. Among authors: novak p. Genome Biol Evol. 2012;4(4):575-85. doi: 10.1093/gbe/evs038. Epub 2012 Apr 4. Genome Biol Evol. 2012. PMID: 22491057 Free PMC article.

7

A widespread occurrence of extra open reading frames in plant Ty3/gypsy retrotransposons.

Steinbauerová V, Neumann P, Novák P, Macas J. Steinbauerová V, et al. Among authors: novak p. Genetica. 2011 Dec;139(11-12):1543-55. doi: 10.1007/s10709-012-9654-9. Epub 2012 Apr 29. Genetica. 2011. PMID: 22544262

8

Independent, rapid and targeted loss of highly repetitive DNA in natural and synthetic allopolyploids of Nicotiana tabacum.

Renny-Byfield S, Kovařík A, Chester M, Nichols RA, Macas J, Novák P, Leitch AR. Renny-Byfield S, et al. Among authors: novak p. PLoS One. 2012;7(5):e36963. doi: 10.1371/journal.pone.0036963. Epub 2012 May 14. PLoS One. 2012. PMID: 22606317 Free PMC article.

9

Next-generation sequencing reveals the impact of repetitive DNA across phylogenetically closely related genomes of Orobanchaceae.

Piednoël M, Aberer AJ, Schneeweiss GM, Macas J, Novak P, Gundlach H, Temsch EM, Renner SS. Piednoël M, et al. Among authors: novak p. Mol Biol Evol. 2012 Nov;29(11):3601-11. doi: 10.1093/molbev/mss168. Epub 2012 Jun 21. Mol Biol Evol. 2012. PMID: 22723303 Free PMC article.

10

Stretching the rules: monocentric chromosomes with multiple centromere domains.

Neumann P, Navrátilová A, Schroeder-Reiter E, Koblížková A, Steinbauerová V, Chocholová E, Novák P, Wanner G, Macas J. Neumann P, et al. Among authors: novak p. PLoS Genet. 2012;8(6):e1002777. doi: 10.1371/journal.pgen.1002777. Epub 2012 Jun 21. PLoS Genet. 2012. PMID: 22737088 Free PMC article.

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