Mukhopadhyay C - Search Results

1

Temperature dependent aggregation mechanism and pathway of lysozyme: By all atom and coarse grained molecular dynamics simulation.

Islam S, Shahzadi Z, Mukhopadhyay C. Islam S, et al. Among authors: mukhopadhyay c. J Mol Graph Model. 2021 Mar;103:107816. doi: 10.1016/j.jmgm.2020.107816. Epub 2020 Nov 27. J Mol Graph Model. 2021. PMID: 33291026

2

Unfolding dynamics of the protein ubiquitin: insight from simulation.

Dastidar SG, Mukhopadhyay C. Dastidar SG, et al. Among authors: mukhopadhyay c. Phys Rev E Stat Nonlin Soft Matter Phys. 2005 Nov;72(5 Pt 1):051928. doi: 10.1103/PhysRevE.72.051928. Epub 2005 Nov 29. Phys Rev E Stat Nonlin Soft Matter Phys. 2005. PMID: 16383666

3

Steered unfolding of ricin A and B chains.

Ganguly D, Mukhopadhyay C. Ganguly D, et al. Among authors: mukhopadhyay c. J Mol Graph Model. 2008 Oct;27(3):266-74. doi: 10.1016/j.jmgm.2008.05.001. Epub 2008 May 4. J Mol Graph Model. 2008. PMID: 18565774

4

Mechanical unfolding pathway and origin of mechanical stability of proteins of ubiquitin family: an investigation by steered molecular dynamics simulation.

Das A, Mukhopadhyay C. Das A, et al. Among authors: mukhopadhyay c. Proteins. 2009 Jun;75(4):1024-34. doi: 10.1002/prot.22314. Proteins. 2009. PMID: 19089957

5

Binding, conformational transition and dimerization of amyloid-β peptide on GM1-containing ternary membrane: insights from molecular dynamics simulation.

Manna M, Mukhopadhyay C. Manna M, et al. Among authors: mukhopadhyay c. PLoS One. 2013 Aug 9;8(8):e71308. doi: 10.1371/journal.pone.0071308. eCollection 2013. PLoS One. 2013. PMID: 23951128 Free PMC article.

6

Concentration-dependent like-charge pairing of guanidinium ions and effect of guanidinium chloride on the structure and dynamics of water from all-atom molecular dynamics simulation.

Mandal M, Mukhopadhyay C. Mandal M, et al. Among authors: mukhopadhyay c. Phys Rev E Stat Nonlin Soft Matter Phys. 2013 Nov;88(5):052708. doi: 10.1103/PhysRevE.88.052708. Epub 2013 Nov 11. Phys Rev E Stat Nonlin Soft Matter Phys. 2013. PMID: 24329297

7

Microsecond molecular dynamics simulation of guanidinium chloride induced unfolding of ubiquitin.

Mandal M, Mukhopadhyay C. Mandal M, et al. Among authors: mukhopadhyay c. Phys Chem Chem Phys. 2014 Oct 21;16(39):21706-16. doi: 10.1039/c4cp01657b. Epub 2014 Sep 8. Phys Chem Chem Phys. 2014. PMID: 25197836

8

Effect of temperature on the phase behaviour of fully saturated DAPC lipid bilayer: a comparative molecular dynamics simulation study.

Basu I, Mukhopadhyay C. Basu I, et al. Among authors: mukhopadhyay c. Adv Exp Med Biol. 2015;842:263-77. doi: 10.1007/978-3-319-11280-0_17. Adv Exp Med Biol. 2015. PMID: 25408349 No abstract available.

9

Impact of glycosylation on stability, structure and unfolding of soybean agglutinin (SBA): an insight from thermal perturbation molecular dynamics simulations.

Halder S, Surolia A, Mukhopadhyay C. Halder S, et al. Among authors: mukhopadhyay c. Glycoconj J. 2015 Aug;32(6):371-84. doi: 10.1007/s10719-015-9601-y. Epub 2015 Jun 16. Glycoconj J. 2015. PMID: 26077366

10

Effect of glycosylation on hydration behavior at the ice-binding surface of the Ocean Pout type III antifreeze protein: a molecular dynamics simulation.

Halder S, Mukhopadhyay C. Halder S, et al. Among authors: mukhopadhyay c. J Biomol Struct Dyn. 2017 Dec;35(16):3591-3604. doi: 10.1080/07391102.2016.1264888. Epub 2016 Dec 26. J Biomol Struct Dyn. 2017. PMID: 27882844

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