Bacolla A - Search Results

1

Heritable pattern of oxidized DNA base repair coincides with pre-targeting of repair complexes to open chromatin.

Bacolla A, Sengupta S, Ye Z, Yang C, Mitra J, De-Paula RB, Hegde ML, Ahmed Z, Mort M, Cooper DN, Mitra S, Tainer JA. Bacolla A, et al. Nucleic Acids Res. 2021 Jan 11;49(1):221-243. doi: 10.1093/nar/gkaa1120. Nucleic Acids Res. 2021. PMID: 33300026 Free PMC article.

2

Breakpoints of gross deletions coincide with non-B DNA conformations.

Bacolla A, Jaworski A, Larson JE, Jakupciak JP, Chuzhanova N, Abeysinghe SS, O'Connell CD, Cooper DN, Wells RD. Bacolla A, et al. Proc Natl Acad Sci U S A. 2004 Sep 28;101(39):14162-7. doi: 10.1073/pnas.0405974101. Epub 2004 Sep 17. Proc Natl Acad Sci U S A. 2004. PMID: 15377784 Free PMC article.

3

Long homopurine*homopyrimidine sequences are characteristic of genes expressed in brain and the pseudoautosomal region.

Bacolla A, Collins JR, Gold B, Chuzhanova N, Yi M, Stephens RM, Stefanov S, Olsh A, Jakupciak JP, Dean M, Lempicki RA, Cooper DN, Wells RD. Bacolla A, et al. Nucleic Acids Res. 2006 May 19;34(9):2663-75. doi: 10.1093/nar/gkl354. Print 2006. Nucleic Acids Res. 2006. PMID: 16714445 Free PMC article.

4

Abundance and length of simple repeats in vertebrate genomes are determined by their structural properties.

Bacolla A, Larson JE, Collins JR, Li J, Milosavljevic A, Stenson PD, Cooper DN, Wells RD. Bacolla A, et al. Genome Res. 2008 Oct;18(10):1545-53. doi: 10.1101/gr.078303.108. Epub 2008 Aug 7. Genome Res. 2008. PMID: 18687880 Free PMC article.

5

Gene conversion causing human inherited disease: evidence for involvement of non-B-DNA-forming sequences and recombination-promoting motifs in DNA breakage and repair.

Chuzhanova N, Chen JM, Bacolla A, Patrinos GP, Férec C, Wells RD, Cooper DN. Chuzhanova N, et al. Among authors: bacolla a. Hum Mutat. 2009 Aug;30(8):1189-98. doi: 10.1002/humu.21020. Hum Mutat. 2009. PMID: 19431182 Free PMC article.

6

Cruciform-forming inverted repeats appear to have mediated many of the microinversions that distinguish the human and chimpanzee genomes.

Kolb J, Chuzhanova NA, Högel J, Vasquez KM, Cooper DN, Bacolla A, Kehrer-Sawatzki H. Kolb J, et al. Among authors: bacolla a. Chromosome Res. 2009;17(4):469-83. doi: 10.1007/s10577-009-9039-9. Epub 2009 May 28. Chromosome Res. 2009. PMID: 19475482

7

Non-B DNA-forming sequences and WRN deficiency independently increase the frequency of base substitution in human cells.

Bacolla A, Wang G, Jain A, Chuzhanova NA, Cer RZ, Collins JR, Cooper DN, Bohr VA, Vasquez KM. Bacolla A, et al. J Biol Chem. 2011 Mar 25;286(12):10017-26. doi: 10.1074/jbc.M110.176636. Epub 2011 Feb 1. J Biol Chem. 2011. PMID: 21285356 Free PMC article.

8

On the sequence-directed nature of human gene mutation: the role of genomic architecture and the local DNA sequence environment in mediating gene mutations underlying human inherited disease.

Cooper DN, Bacolla A, Férec C, Vasquez KM, Kehrer-Sawatzki H, Chen JM. Cooper DN, et al. Among authors: bacolla a. Hum Mutat. 2011 Oct;32(10):1075-99. doi: 10.1002/humu.21557. Epub 2011 Sep 2. Hum Mutat. 2011. PMID: 21853507 Free PMC article. Review.

9

DNA structure matters.

Bacolla A, Cooper DN, Vasquez KM. Bacolla A, et al. Genome Med. 2013 Jun 24;5(6):51. doi: 10.1186/gm455. eCollection 2013. Genome Med. 2013. PMID: 23796271 Free PMC article. No abstract available.

10

DHX9 helicase is involved in preventing genomic instability induced by alternatively structured DNA in human cells.

Jain A, Bacolla A, Del Mundo IM, Zhao J, Wang G, Vasquez KM. Jain A, et al. Among authors: bacolla a. Nucleic Acids Res. 2013 Dec;41(22):10345-57. doi: 10.1093/nar/gkt804. Epub 2013 Sep 17. Nucleic Acids Res. 2013. PMID: 24049074 Free PMC article.

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