Wang L - Search Results

1

Recent advances in constraint and machine learning-based metabolic modeling by leveraging stoichiometric balances, thermodynamic feasibility and kinetic law formalisms.

Suthers PF, Foster CJ, Sarkar D, Wang L, Maranas CD. Suthers PF, et al. Among authors: wang l. Metab Eng. 2021 Jan;63:13-33. doi: 10.1016/j.ymben.2020.11.013. Epub 2020 Dec 10. Metab Eng. 2021. PMID: 33310118 Review.

2

Building kinetic models for metabolic engineering.

Foster CJ, Wang L, Dinh HV, Suthers PF, Maranas CD. Foster CJ, et al. Among authors: wang l. Curr Opin Biotechnol. 2021 Feb;67:35-41. doi: 10.1016/j.copbio.2020.11.010. Epub 2020 Dec 24. Curr Opin Biotechnol. 2021. PMID: 33360621 Review.

3

Pathway design using de novo steps through uncharted biochemical spaces.

Kumar A, Wang L, Ng CY, Maranas CD. Kumar A, et al. Among authors: wang l. Nat Commun. 2018 Jan 12;9(1):184. doi: 10.1038/s41467-017-02362-x. Nat Commun. 2018. PMID: 29330441 Free PMC article.

4

A review of computational tools for design and reconstruction of metabolic pathways.

Wang L, Dash S, Ng CY, Maranas CD. Wang L, et al. Synth Syst Biotechnol. 2017 Nov 15;2(4):243-252. doi: 10.1016/j.synbio.2017.11.002. eCollection 2017 Dec. Synth Syst Biotechnol. 2017. PMID: 29552648 Free PMC article. Review.

5

Accelerating flux balance calculations in genome-scale metabolic models by localizing the application of loopless constraints.

Chan SHJ, Wang L, Dash S, Maranas CD. Chan SHJ, et al. Among authors: wang l. Bioinformatics. 2018 Dec 15;34(24):4248-4255. doi: 10.1093/bioinformatics/bty446. Bioinformatics. 2018. PMID: 29868725

6

Pareto Optimality Explanation of the Glycolytic Alternatives in Nature.

Ng CY, Wang L, Chowdhury A, Maranas CD. Ng CY, et al. Among authors: wang l. Sci Rep. 2019 Feb 22;9(1):2633. doi: 10.1038/s41598-019-38836-9. Sci Rep. 2019. PMID: 30796263 Free PMC article.

7

dGPredictor: Automated fragmentation method for metabolic reaction free energy prediction and de novo pathway design.

Wang L, Upadhyay V, Maranas CD. Wang L, et al. PLoS Comput Biol. 2021 Sep 27;17(9):e1009448. doi: 10.1371/journal.pcbi.1009448. eCollection 2021 Sep. PLoS Comput Biol. 2021. PMID: 34570771 Free PMC article.

8

Standardizing biomass reactions and ensuring complete mass balance in genome-scale metabolic models.

Chan SHJ, Cai J, Wang L, Simons-Senftle MN, Maranas CD. Chan SHJ, et al. Among authors: wang l. Bioinformatics. 2017 Nov 15;33(22):3603-3609. doi: 10.1093/bioinformatics/btx453. Bioinformatics. 2017. PMID: 29036557

9

MinGenome: An In Silico Top-Down Approach for the Synthesis of Minimized Genomes.

Wang L, Maranas CD. Wang L, et al. ACS Synth Biol. 2018 Feb 16;7(2):462-473. doi: 10.1021/acssynbio.7b00296. Epub 2018 Jan 20. ACS Synth Biol. 2018. PMID: 29254336

10

Computationally Prospecting Potential Pathways from Lignin Monomers and Dimers toward Aromatic Compounds.

Wang L, Maranas CD. Wang L, et al. ACS Synth Biol. 2021 May 21;10(5):1064-1076. doi: 10.1021/acssynbio.0c00598. Epub 2021 Apr 20. ACS Synth Biol. 2021. PMID: 33877818

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